View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_low_8 (Length: 481)
Name: NF11789_low_8
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 39686602 - 39687051
Alignment:
| Q |
17 |
agttacctgatccacaatgaataaatcttgatccaatttaccaatgataaatccaagattgaattgcccaatcacctgttaaaacataatatcaaagtaa |
116 |
Q |
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| T |
39686602 |
agttacctgatccacaatgaataaatcttgatccaatttaccaatgataaatccaagattgaattgcccaatcacctgttaaaacataatatcaaagtaa |
39686701 |
T |
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| Q |
117 |
taagcctttgaatacatgatatatttaatctgaaattgtaggtataattgagcagataaggatttaaatatgattttagtatgatggattagatgtgcgg |
216 |
Q |
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| T |
39686702 |
taagcctttgaatacatgatatatttaatctgaaattgtaggtataattgagcagataaggatttaaatatgattttagtatgatggattagatgtgcgg |
39686801 |
T |
|
| Q |
217 |
attttgtattccaaaaacattgatttggctttatggtggacnnnnnnncttagaaaaacctaacaacttggttgcactttctccacttactaaaatagca |
316 |
Q |
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| T |
39686802 |
attttgtattccaaaaacattgatttggctttatggtggacaaaaaaacttagaaaaacctaacaacttggttgcactttctccacttactaaaatagcg |
39686901 |
T |
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| Q |
317 |
ttgagtattgacatctggacaaccaataagctcaacaacatccaatttaatnnnnnnnnntatgaatcatactaacaaccttcattctgctgaagtattc |
416 |
Q |
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| T |
39686902 |
ttgagtattgacatctggacaaccaataagctcaacaacatccaatttaataaaaaaaaatatgaatcatactaaaaaccttcattctgctgaagtattc |
39687001 |
T |
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| Q |
417 |
cttcttgaacaatctttcgagttcggtggctgctgctgccaaaacccttt |
466 |
Q |
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| T |
39687002 |
cttcttgaacaatctttcgagttcggtggctgctgctgccaaaacccttt |
39687051 |
T |
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