View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11790_high_1 (Length: 646)
Name: NF11790_high_1
Description: NF11790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11790_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 41 - 630
Target Start/End: Complemental strand, 29227544 - 29226966
Alignment:
| Q |
41 |
ctgtactctcttcctctcaaattaatttcaaagtggtactatataggttttttcttgttattatccttcccacgaatgacacagaacaacatgtaatgtc |
140 |
Q |
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| T |
29227544 |
ctgtactctcttcctctgaaattaatttcaaagtggtactatatag--tttttcttgt-atccttcttcccacgaatgacacagaacaacatgtaatgtc |
29227448 |
T |
|
| Q |
141 |
gacacataacttaccatagtgtgacacaaagagttctcttgtactctaatgcatggcacctgttttgtcaatttattttccagcatttattactacaact |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227447 |
gacacataacttaccatagtgtgacacaaagagttctcctgtactctaatgcatggcacctgttttgtcaatttattttccagcatttattactacaact |
29227348 |
T |
|
| Q |
241 |
gacttttagttaatttttacatagccaaactactcaggagtcaggaccaattcttttgatattttccaccatttatttcttgagcagtgaacactgcact |
340 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227347 |
gacttttggttaatttttacatagccaaactattcaggagtcaggaccaattcttttgatattttccaccatttatttcttgagcagtgaacactgcact |
29227248 |
T |
|
| Q |
341 |
ttagatatatagtttgtcattcttcttatatattaataacaccaatagtttatttattctcttttcattttatttccttagagatcacaaagataagtta |
440 |
Q |
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| T |
29227247 |
gtagatatatagtttgtcattcttcttatatattaataacaccaatagtttatttattctcttttcatattttttccttagag---acaaaga-----ta |
29227156 |
T |
|
| Q |
441 |
agaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactg |
540 |
Q |
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| T |
29227155 |
agaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactg |
29227056 |
T |
|
| Q |
541 |
ggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatctgtg |
630 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29227055 |
ggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatttgtg |
29226966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 420 - 630
Target Start/End: Original strand, 29144797 - 29145007
Alignment:
| Q |
420 |
agagatcacaaagataagttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144797 |
agagatcacaaagataagttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
29144896 |
T |
|
| Q |
520 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144897 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgc |
29144996 |
T |
|
| Q |
620 |
tgctatctgtg |
630 |
Q |
| |
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|||||| |||| |
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| T |
29144997 |
tgctatttgtg |
29145007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 453 - 623
Target Start/End: Complemental strand, 5307016 - 5306846
Alignment:
| Q |
453 |
aacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttc |
552 |
Q |
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||||||||||||| | |||||||||| |||||||||| || || ||||| |||||||| |||||||||||||||||||||| ||||||||| |||||| |
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| T |
5307016 |
aacacagagagaactcaaagtatgaaagaatggttcatctcttcccaagctcttcttagcatgttattagtgcaaatatttggaactgggatacaacttt |
5306917 |
T |
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| Q |
553 |
tatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgct |
623 |
Q |
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||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||||||| |||||||||||| |
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| T |
5306916 |
tatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaattgttgctgct |
5306846 |
T |
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