View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11790_high_2 (Length: 590)

Name: NF11790_high_2
Description: NF11790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11790_high_2
NF11790_high_2
[»] chr7 (7 HSPs)
chr7 (147-440)||(6003283-6003580)
chr7 (341-440)||(2570423-2570522)
chr7 (24-93)||(6003160-6003229)
chr7 (192-286)||(2570114-2570208)
chr7 (194-294)||(27993561-27993661)
chr7 (202-294)||(46262144-46262236)
chr7 (235-374)||(25153217-25153362)
[»] chr4 (7 HSPs)
chr4 (192-440)||(26500150-26500402)
chr4 (192-440)||(1799100-1799359)
chr4 (191-376)||(10388514-10388703)
chr4 (194-279)||(37707395-37707480)
chr4 (192-316)||(40813783-40813908)
chr4 (207-376)||(17416448-17416621)
chr4 (400-440)||(6760858-6760898)
[»] chr8 (7 HSPs)
chr8 (192-440)||(38387872-38388124)
chr8 (195-440)||(46101-46351)
chr8 (193-363)||(1579093-1579268)
chr8 (311-430)||(4489610-4489733)
chr8 (192-294)||(40531188-40531288)
chr8 (192-294)||(544375-544477)
chr8 (343-386)||(22915941-22915984)
[»] chr3 (9 HSPs)
chr3 (193-438)||(17324034-17324283)
chr3 (192-440)||(16285020-16285272)
chr3 (194-440)||(45181550-45181800)
chr3 (340-440)||(23087617-23087717)
chr3 (192-294)||(2782094-2782196)
chr3 (194-294)||(3968575-3968675)
chr3 (194-294)||(4000130-4000230)
chr3 (200-284)||(18983225-18983309)
chr3 (234-287)||(30127258-30127311)
[»] chr2 (7 HSPs)
chr2 (193-436)||(37128802-37129049)
chr2 (192-440)||(41958187-41958438)
chr2 (206-376)||(4397369-4397543)
chr2 (192-378)||(42048152-42048343)
chr2 (193-288)||(4162051-4162145)
chr2 (214-284)||(23665439-23665509)
chr2 (194-294)||(9560813-9560913)
[»] chr5 (12 HSPs)
chr5 (206-440)||(39368830-39369067)
chr5 (192-440)||(35847051-35847304)
chr5 (193-440)||(42742213-42742461)
chr5 (192-440)||(3204238-3204488)
chr5 (240-440)||(29685828-29686032)
chr5 (283-440)||(25362318-25362479)
chr5 (200-440)||(2707023-2707267)
chr5 (341-440)||(17218822-17218921)
chr5 (192-279)||(18557491-18557577)
chr5 (311-433)||(2334625-2334752)
chr5 (405-440)||(1223089-1223124)
chr5 (249-287)||(31721688-31721726)
[»] chr1 (7 HSPs)
chr1 (192-436)||(38709907-38710154)
chr1 (239-436)||(4397349-4397550)
chr1 (192-440)||(4391561-4391814)
chr1 (193-288)||(38564857-38564951)
chr1 (194-294)||(13987577-13987677)
chr1 (214-294)||(17891487-17891567)
chr1 (247-287)||(30655569-30655609)
[»] chr6 (2 HSPs)
chr6 (194-294)||(7546454-7546554)
chr6 (193-285)||(12129173-12129264)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 147 - 440
Target Start/End: Original strand, 6003283 - 6003580
Alignment:
Q  147 gatactactacgtcccattgaaacaaggagaaggaaataacttaaaaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtca 246  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6003283 gatactactacgtcccattgaaacaaggagaaggaagtaacttaaaaggtgtctgctccggtggtttgtgaattgagtgatgcctttttgatttgtgtca 6003382  T
Q  247 ggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaac 342  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||| |||||||||| ||||    ||||||||||    
T  6003383 ggagtcttatgggccgatcgcttttgattcgaggtcggaagcaaatttgtgtctcaggtccttttaggctgttgtgatgtcgcctccgatagactgaaac 6003482  T
Q  343 ttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003483 ttgagtggtggtcgaagctgaacgtttgaagcaacatcaatatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 6003580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 2570423 - 2570522
Alignment:
Q  341 acttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  2570423 acttgagtggtggtcgaagctgaacctttgaagcaaaatcactttcgggtgcctttttgatcactgttggcggtgttggttctttgaggtgttgttgtta 2570522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 6003160 - 6003229
Alignment:
Q  24 taagcgatcattttccaagaacgttccaaagagcgtttagctttgtgtgtagggcatcaattgttagaga 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003160 taagcgatcattttccaagaacgttccaaagagcgtttagctttgtgtgtagggcatcaattgttagaga 6003229  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 2570114 - 2570208
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcggga 286  Q
    ||||||||||||| ||| | | |||||||||| | ||||||||||| |||||||||||||||  |||||  ||||||||||||||||||||||||    
T  2570114 aaggtgtttgctctggttgctcgtgagttgaggggtgcctttttgacttgtgtcaggagtctggtgggcttatcgcttttgattcgaggtcggga 2570208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 27993661 - 27993561
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||||||||| ||||||| |||||||||| | || |||| ||||||||||| |||||||  ||| |||||| ||||||||||||| |||||||| ||||    
T  27993661 ggtgtttgctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggagctagtt 27993562  T
Q  294 t 294  Q
    |    
T  27993561 t 27993561  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 46262236 - 46262144
Alignment:
Q  202 ctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagttt 294  Q
    |||||||| || |||||||||| | ||||||||||||| ||||  |||||||  |||||||||| ||||||||||||| |||||||| |||||    
T  46262236 ctccggtgattcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgatcacttttgattcgagatcgggagctagttt 46262144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 374
Target Start/End: Original strand, 25153217 - 25153362
Alignment:
Q  235 tgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgt--ctcaggttcttctaggctattgtgatgtctcctc 332  Q
    ||||||||||| |||||||  ||| |||||| ||||||||||||| |||  ||| ||||| | |  || |||||||| ||| ||||| || |||||||||    
T  25153217 tgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgaaagccagtttttcttacttaggttcttttagactattttggtgtctcctc 25153316  T
Q  333 ----agactgaaacttgagtggtggtcgaagctgaacgtttgaagc 374  Q
        |||| | || |||| ||||||||||| ||||| |||||||||    
T  25153317 caatagaccggaagttgactggtggtcgaatctgaatgtttgaagc 25153362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 192 - 440
Target Start/End: Complemental strand, 26500402 - 26500150
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| |||||  |||||| |||||||||| | ||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||||||||||||    
T  26500402 aaggtgtatgctctagtggttcgtgagttgaggggtgcctttttgacttgtgtcggaagtcttgtgggtcgatcgcttttgattcgaggtcgggagcaag 26500303  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||| |||| || ||| |||||| |||||||||||||||    |||| | ||||||||||||||||||||||||||||||||||||| |||| ||||     
T  26500302 tttgtgactcaagtccttttaggctgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacgtttgaagcaaaatcaatatcg 26500203  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||| || || | ||||||||| |||||||||||||||||||||||||||||    
T  26500202 ggtgctttattcaccactgttggtggtgttggttctttgaggagctgttgtta 26500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 1799100 - 1799359
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||||||||||| |||||||||| | ||||||||||| |||||| ||||||||| | | || | |||||||||||| ||||| ||||||||    
T  1799100 aaggtgtctgctccggtggttcgtgagttgaggggtgcctttttgacttgtgtaaggagtcttgttgaccaaacgcttttgattctaggtcaggagcaag 1799199  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||||||||||| ||| ||||||||||||||||||||||    | ||  ||| ||||||||||||||||||||| ||||||||||||||||| ||||     
T  1799200 tttgtgtctcaggtccttttaggctattgtgatgtctcctccgataaaccaaaatttgagtggtggtcgaagctgatcgtttgaagcaacatcattatcg 1799299  T
Q  388 ggtgccttttttatcactgtt-------ggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||    
T  1799300 ggtgcctttttgatcactgttggcagacggcagtgttggttctttgaggagctgttgtta 1799359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 191 - 376
Target Start/End: Original strand, 10388514 - 10388703
Alignment:
Q  191 aaaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaa 290  Q
    |||||||| |||||  ||| || |||||||||| |||| |||||||| ||| |||  ||||||| |||||||||| ||||||||||||||||||||||||    
T  10388514 aaaggtgtctgctctagtgcttcgtgagttgagggatgtctttttgacttgcgtcgagagtcttgtgggccgatcacttttgattcgaggtcgggagcaa 10388613  T
Q  291 gtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaa 376  Q
    |||| || ||||||| ||| |||||| |||||||||||||||    |||| | | |||||||||||||||||||| ||||||||||||||    
T  10388614 gtttatgactcaggtccttttaggctgttgtgatgtctcctctgatagaccggatcttgagtggtggtcgaagctaaacgtttgaagcaa 10388703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 37707480 - 37707395
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgag 279  Q
    ||||| ||||| ||||||| |||||||||| | |||||||||| | |||||| |||||||  |||||||||| |||||||||||||    
T  37707480 ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgag 37707395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 40813908 - 40813783
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggag-caa 290  Q
    ||||||| |||||  |||||| |||| ||||  | ||||||| ||||||| ||| |||||||  |||||||||| ||||||||||||| ||||||| |||    
T  40813908 aaggtgtctgctctagtggttcgtgaattgaagggtgcctttatgatttgcgtcgggagtctggtgggccgatcacttttgattcgagatcgggagccaa 40813809  T
Q  291 gtttgtgtctcaggttcttctaggct 316  Q
     ||| || ||||||||||| ||||||    
T  40813808 ttttttgactcaggttcttttaggct 40813783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 376
Target Start/End: Complemental strand, 17416621 - 17416448
Alignment:
Q  207 gtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggtt 306  Q
    |||||| |||||||||| | |||||   ||||| |||||  ||| ||  |||||||||| ||||||||||||| || ||||| ||||| |  |  | ||     
T  17416621 gtggttcgtgagttgaggggtgcctaaatgattggtgtcgagagcctagtgggccgatcacttttgattcgagatcaggagctagttttttgcctatgtc 17416522  T
Q  307 cttctaggctattgtgatgtctcctcagactga----aacttgagtggtggtcgaagctgaacgtttgaagcaa 376  Q
    ||| |||||| ||||||||||||||| ||| ||    |  |||||||||||||||||||||| |||||||||||    
T  17416521 cttttaggcttttgtgatgtctcctccgacagaccagatgttgagtggtggtcgaagctgaatgtttgaagcaa 17416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 6760858 - 6760898
Alignment:
Q  400 atcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  6760858 atcactgttggcggtgttggttctttgatgagctattgtta 6760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 38387872 - 38388124
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||||||||| ||||||| |||||||||| | ||||||||||| || |||| |||||||| |||||| ||| |||||||||| ||||| ||||||||    
T  38387872 aaggtgtttgctctggtggttcgtgagttgaggggtgcctttttgacttatgtcgggagtcttgtgggccaatcacttttgattcaaggtcaggagcaag 38387971  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||| ||||||| ||| ||||||||||||||||||| ||    |||||   |||||||||||||||||||||||||||||||||||| |||||||||     
T  38387972 tttgtgactcaggtccttttaggctattgtgatgtctcatctgatagactaggacttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcg 38388071  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    |||||||  || ||||||||||  ||||||||||||| |||||| ||||||||    
T  38388072 ggtgcctaattgatcactgttgatggtgttggttcttcgaggagttgttgtta 38388124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 46351 - 46101
Alignment:
Q  195 gtgtttgctccggtggttt-gtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    |||| ||||||||||| || |||||||||| | ||||||||||| ||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||    
T  46351 gtgtctgctccggtgggttcgtgagttgaggggtgcctttttgacttgtgtcgggagtcttgtgggccaatcgcttttgattccaggtcgggagcaagtt 46252  T
Q  294 tgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcagg 389  Q
    | || ||||||| ||| |||| | |||||||||||||||    |||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  46251 tctgactcaggtccttttaggttgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgaacgtttgaagcaaaatcactatcagg 46152  T
Q  390 tgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
     | |   || |||| ||||| | ||||||||||||||||||| ||||||||    
T  46151 cgtcgaattgatcattgttgacagtgttggttctttgaggagttgttgtta 46101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 193 - 363
Target Start/End: Original strand, 1579093 - 1579268
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagt 292  Q
    |||||| ||||| ||||||| |||||||||| ||||||| ||| | ||||||  |||||||| |||||||||| |||||||||| | |||||||||||||    
T  1579093 aggtgtctgctctggtggttcgtgagttgagggatgcctcttttacttgtgttgggagtcttgtgggccgatcacttttgattcaaagtcgggagcaagt 1579192  T
Q  293 -ttgtgtctcaggttcttctaggctattgtgatgtctcct----cagactgaaacttgagtggtggtcgaagctga 363  Q
     ||||| ||||||| |||||||| | |||||||||||| |     || | ||||||||||||||||||||||||||    
T  1579193 cttgtgactcaggtccttctaggttgttgtgatgtctcttgcgataggccgaaacttgagtggtggtcgaagctga 1579268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 430
Target Start/End: Complemental strand, 4489733 - 4489610
Alignment:
Q  311 taggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactg 406  Q
    |||||| |||||||||||||||    |||||| ||||||||||||||| |||||| |||||||||||||| |||| ||||  |||| |  |||| ||||     
T  4489733 taggcttttgtgatgtctcctccgatagactggaacttgagtggtggtagaagctaaacgtttgaagcaaaatcattatcgagtgcttaatttaacacta 4489634  T
Q  407 ttggcggtgttggttctttgagga 430  Q
    |||| |||||||||||||||||||    
T  4489633 ttggtggtgttggttctttgagga 4489610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 40531188 - 40531288
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| ||||| |  ||||||||| | |||| |||||||||||||||  ||||| ||||||||||| ||||||||||||| |||||||| ||    
T  40531188 aaggtgtctgctctggtgggtcttgagttgaggggtgccgttttgatttgtgtca--agtctgatgggccgatcacttttgattcgagatcgggagctag 40531285  T
Q  292 ttt 294  Q
    |||    
T  40531286 ttt 40531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 544477 - 544375
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| ||||| |||||||||||  |||||| |||||||||||||| |||||||  |||| ||||| |||| |||||||| |||| ||| ||    
T  544477 aaggtgtctgctctggtggattgtgagttgacggatgccgttttgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcggaagctag 544378  T
Q  292 ttt 294  Q
    |||    
T  544377 ttt 544375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 22915941 - 22915984
Alignment:
Q  343 ttgagtggtggtcgaagctgaacgtttgaagcaacatcactatc 386  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||    
T  22915941 ttgagtggtagtcgaagctgaacgtttgaagcaaattcactatc 22915984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 193 - 438
Target Start/End: Complemental strand, 17324283 - 17324034
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagt 292  Q
    |||||| | ||||||||||| |||||||||| | ||||||||| | || ||||  ||||||| |||||||||| ||||||||||||||||||||||||||    
T  17324283 aggtgtctactccggtggttcgtgagttgaggggtgccttttttacttatgtcgtgagtcttgtgggccgatctcttttgattcgaggtcgggagcaagt 17324184  T
Q  293 ttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcag 388  Q
    || || || |||| ||| || |||||||||||||||||||    | |||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  17324183 ttctgacttaggtccttttaagctattgtgatgtctcctccgatatactggaactagagtggtggtcgaagctgaacgtttgaagcaaaatcactatcag 17324084  T
Q  389 gtgccttttttatcactgttggcggtgttggttctttgaggagctgttgt 438  Q
    ||| |   || |||||||||||||||||||||||||||||||| ||||||    
T  17324083 gtgtcgaattgatcactgttggcggtgttggttctttgaggagttgttgt 17324034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 16285020 - 16285272
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| |||||  |||||| |||||||||| | ||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  16285020 aaggtgtctgctcttgtggttcgtgagttgaggggtgcctttttgactagtgtctggagtcttgtgggccgatcgcttttgattcgaggtcgggagcaag 16285119  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||| | ||||||| ||| |||||| |||||| | ||||||    | || | |||||||||||||||| ||||||||| |||||||||| |||||||||     
T  16285120 tttgcgactcaggtccttttaggctgttgtgacggctcctccgataaaccggaacttgagtggtggtcaaagctgaacatttgaagcaaaatcactatcg 16285219  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    |||||||  || |||||||||||||||||||||||||| |||| |||||||||    
T  16285220 ggtgcctaattaatcactgttggcggtgttggttctttaaggaactgttgtta 16285272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 194 - 440
Target Start/End: Original strand, 45181550 - 45181800
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||||||| |||||||||| | ||||||||||| || |||| |||||||| |||||| |||||||||||||||||||||| ||||||||    
T  45181550 ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgacttttgtcgggagtcttgtgggccaatcgcttttgattcgaggtcggaagcaagtt 45181649  T
Q  294 tgtgtctcaggttcttctaggctattgtgatgtctcct----cagactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcagg 389  Q
    |||| ||||||| ||| |||||| ||||||||||||||     |||| | ||||| |||||||||||||||| ||| | |||| ||| |||||||||| |    
T  45181650 tgtgactcaggtccttttaggctgttgtgatgtctccttcgatagaccggaacttaagtggtggtcgaagctaaacatctgaatcaatatcactatcaag 45181749  T
Q  390 tgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    |||||  || ||||| |||||||||||||||||||||||||||||||||||    
T  45181750 tgcctaattgatcaccgttggcggtgttggttctttgaggagctgttgtta 45181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 440
Target Start/End: Original strand, 23087617 - 23087717
Alignment:
Q  340 aacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtt 439  Q
    |||||||||| | ||||||||||||||||||||| || ||||||||| | |||||  || |||| ||||||||||| ||||||||||| |||||||||||    
T  23087617 aacttgagtgatagtcgaagctgaacgtttgaagtaaaatcactatcggatgcctaattgatcattgttggcggtgatggttctttgatgagctgttgtt 23087716  T
Q  440 a 440  Q
    |    
T  23087717 a 23087717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 2782196 - 2782094
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| |||||||||||||||||| | ||||||  |||||||||||  ||||||  |||| ||||| |||||||||  || |||||||| ||    
T  2782196 aaggtgtctgctctggtggtttgtgagttgaggggtgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgattttagatcgggagccag 2782097  T
Q  292 ttt 294  Q
    |||    
T  2782096 ttt 2782094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 3968675 - 3968575
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||||||| |||||||||| | ||||||  ||||||||||| |||||||  ||| || |||||||||| |||||| || ||||| ||||    
T  3968675 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagtt 3968576  T
Q  294 t 294  Q
    |    
T  3968575 t 3968575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 4000130 - 4000230
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||||||| |||||||||| | ||||||  ||||||||||| |||||||  ||| || |||||||||| |||||| || ||||| ||||    
T  4000130 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagtt 4000229  T
Q  294 t 294  Q
    |    
T  4000230 t 4000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 18983225 - 18983309
Alignment:
Q  200 tgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgg 284  Q
    ||||| ||||| |||||||||||||| |||||| ||||| ||||||  |||||| |||| ||||||  || ||||||||| ||||    
T  18983225 tgctctggtgggttgtgagttgagtggtgccttattgatctgtgtcgagagtctgatggaccgatcaattatgattcgagatcgg 18983309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 30127258 - 30127311
Alignment:
Q  234 ttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggag 287  Q
    ||||||||| || |||||||  || ||||||||||||||||||||| |||||||    
T  30127258 ttgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggag 30127311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 193 - 436
Target Start/End: Complemental strand, 37129049 - 37128802
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagt 292  Q
    |||||| ||||| ||||||| |||||||||  | ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  37129049 aggtgtctgctctggtggttcgtgagttgataggtgcctttttgacttgtgttaggagtcttgtgggccgatcgcttttgattcgaggtccggaacaagt 37128950  T
Q  293 ttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcag 388  Q
    ||||| |||| || |||  ||| | |||||||||||||||    |||| ||||||||| |||||||||||||||||| ||||| |||| ||||||||| |    
T  37128949 ttgtgactcaagtcctttcaggatgttgtgatgtctcctccgatagaccgaaacttgaatggtggtcgaagctgaacatttgatgcaaaatcactatcgg 37128850  T
Q  389 gtgccttttttatcactgttggcggtgttggttctttgaggagctgtt 436  Q
    ||||||  || |||| ||||||||||||||||||||||||||||||||    
T  37128849 gtgcctaattcatcattgttggcggtgttggttctttgaggagctgtt 37128802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 41958187 - 41958438
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||||||||||| ||| |||| | |||||||||||||||||| ||||||    
T  41958187 aaggtgtctgctctggtggtttgtgagttgaagggtgcctttttgacttgtgtcaggagtcttgtgg-ccgaccacttttgattcgaggtcggaagcaag 41958285  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||| ||||||| ||| ||| || |||| | ||||||||    |||| |||||||||||||||||||||||||||| |||||| ||| |||||||||     
T  41958286 tttgtgactcaggtccttttagtctgttgtaacgtctcctctgatagaccgaaacttgagtggtggtcgaagctgaacatttgaaacaaaatcactatcg 41958385  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    || ||||  || ||||||||||||| ||||||||||||||| || ||||||||    
T  41958386 ggcgcctaattcatcactgttggcgatgttggttctttgagaagttgttgtta 41958438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 4397543 - 4397369
Alignment:
Q  206 ggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggt 305  Q
    ||||||| |||||||||| | |||| |||||| || | || |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  4397543 ggtggttcgtgagttgaggggtgccattttgacttctctcgggagtcttgtgggctgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggt 4397444  T
Q  306 tcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaa 376  Q
     ||| |||| | |||||||||||||||    |||| | ||||||||||||||||||||||| |||||||||||||    
T  4397443 ccttttaggttgttgtgatgtctcctccgaaagaccggaacttgagtggtggtcgaagctgtacgtttgaagcaa 4397369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 378
Target Start/End: Complemental strand, 42048343 - 42048152
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| ||||||| |||||||||| | |||||| ||||||| |||| ||||||  |||||| |||| |||||||||||||  ||||||| ||    
T  42048343 aaggtgtctgctctggtggttcgtgagttgagaggtgccttgttgatttctgtcgggagtccgatgggctgatcacttttgattcgagaccgggagccag 42048244  T
Q  292 -tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 378  Q
     ||| || |||| || ||| ||||||||   |||||||||||    ||||||||| || |||||| ||||||  ||||| ||||||||||||    
T  42048243 ttttttgactcaagtccttttaggctatatggatgtctcctccgatagactgaaagttaagtggttgtcgaatatgaacatttgaagcaaca 42048152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 4162145 - 4162051
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagc 288  Q
    |||||| ||||| ||||||| | |||||||| | |||||  | |||||||||  |||||||  |||||||||| ||||||||||||| ||||||||    
T  4162145 aggtgtatgctctggtggttcgagagttgaggggtgcctagt-gatttgtgttgggagtctggtgggccgatcacttttgattcgagatcgggagc 4162051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 23665509 - 23665439
Alignment:
Q  214 gtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgg 284  Q
    |||||||||| | |||| |||| |||||| || |||||||  |||||||||| ||||||||||||| ||||    
T  23665509 gtgagttgaggggtgccatttttatttgtatcgggagtctagtgggccgatcacttttgattcgagatcgg 23665439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 9560913 - 9560813
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||| ||| |||||||||| | ||||||  |||||||||||   ||| |  ||| |||||| ||||||||||||| |||||||| ||||    
T  9560913 ggtgtctgctctggtagttcgtgagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagctagtt 9560814  T
Q  294 t 294  Q
    |    
T  9560813 t 9560813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 206 - 440
Target Start/End: Original strand, 39368830 - 39369067
Alignment:
Q  206 ggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggt 305  Q
    ||||||| |||||||||| | || |||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||    
T  39368830 ggtggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagcaagtttttgactcaggt 39368929  T
Q  306 tcttctaggctattgtgatgtctcctca----gactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttat 401  Q
    |||| |||| | ||||| ||||||||||    ||| |  || |||||||||||||||||||||||||||||||||  ||||| || |||||||| |||||    
T  39368930 tcttttaggttgttgtgttgtctcctcagtgcgaccgggacgtgagtggtggtcgaagctgaacgtttgaagcaatgtcact-tcgggtgccttatttat 39369028  T
Q  402 cactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  39369029 cactgttggcgatgttggttcttggaggagctgttgtta 39369067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 35847051 - 35847304
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgccttttt-gatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaa 290  Q
    ||||||| ||||| |||||||||||||||||  | ||||||||| || ||||||| ||||| || ||||||||||| ||||||||||||||||||||||     
T  35847051 aaggtgtctgctctggtggtttgtgagttgatgggtgccttttttgacttgtgtcgggagttttgtgggccgatcgattttgattcgaggtcgggagcac 35847150  T
Q  291 gtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatc 386  Q
    ||||||| ||| ||| ||| ||||||  ||||||||||||||    |||| |  |||||||||||||||||||||||||||||||||||| |||||||||    
T  35847151 gtttgtgactcgggtccttttaggctgctgtgatgtctcctccgatagaccgggacttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatc 35847250  T
Q  387 aggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
     |||||||  || || | ||||||||||||||||||||||||||| ||||||||    
T  35847251 gggtgcctaattgataaatgttggcggtgttggttctttgaggagttgttgtta 35847304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 193 - 440
Target Start/End: Complemental strand, 42742461 - 42742213
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagt 292  Q
    |||||| ||||| ||||||| ||| |||| | | ||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  42742461 aggtgtctgctctggtggttcgtgggttgtggggtgcctttttgacttgtgtcgggagtcttgtgggc-gatcgcttttgattcgaggtcgggagcaagt 42742363  T
Q  293 ttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcag 388  Q
    ||||| |||| || ||| |||||| |||||||||||||||    |||||| |||||||||||||||| ||| || |||||||||| || |||||| ||||    
T  42742362 ttgtgactcatgtccttttaggctgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgtacgtttgaaggaaaatcact-tcag 42742264  T
Q  389 gtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||| |  || ||||||||  ||||||||||||||||||||||||||||||    
T  42742263 gtgcc-taattgtcactgttcacggtgttggttctttgaggagctgttgtta 42742213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 3204238 - 3204488
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| ||||| ||||| | |||||||||| | ||||||||| | ||||||||| |||||| ||| || |||| ||||||||||||||||||||||||    
T  3204238 aaggtgtatgctctggtggctcgtgagttgaggggtgcctttttaacttgtgtcag-agtcttgtggaccaatcgtttttgattcgaggtcgggagcaag 3204336  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||| || || ||||| |||||| |||||||||||||||    | |||  |||||||||||||||| |||||||||| ||| ||||| |||  |  |     
T  3204337 tttgtgacttagattcttttaggctgttgtgatgtctcctccgatatactagaacttgagtggtggtcaaagctgaacg-ttggagcaaaatcttttccg 3204435  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
     |||||||||| |||||| ||| ||||||||||||||||||||| ||||||||    
T  3204436 agtgcctttttgatcactattgacggtgttggttctttgaggagttgttgtta 3204488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 240 - 440
Target Start/End: Original strand, 29685828 - 29686032
Alignment:
Q  240 tgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----aga 335  Q
    |||||| ||||||| ||||| ||||| |||||||||||| ||||||||| |||||||| ||||| | ||| |||||| |||||| ||||||||    |||    
T  29685828 tgtgtcgggagtctaatgggtcgatcacttttgattcgaagtcgggagctagtttgtgactcagatccttttaggcttttgtgaagtctcctccgataga 29685927  T
Q  336 ctgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgt 435  Q
    | | || ||| |||||||| |||||||||||||||||||||  ||| |||||||||| |  || | ||||||||  |||||||||||||||||||| |||    
T  29685928 ccggaatttgtgtggtggtggaagctgaacgtttgaagcaaagtcattatcaggtgcttaattgaccactgttgatggtgttggttctttgaggagttgt 29686027  T
Q  436 tgtta 440  Q
    |||||    
T  29686028 tgtta 29686032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 283 - 440
Target Start/End: Original strand, 25362318 - 25362479
Alignment:
Q  283 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 378  Q
    ||||||||||||||| ||||||| ||| |||||| |||||||||||||      |||| | ||||||||||||| | ||||||||||||||||||||| |    
T  25362318 gggagcaagtttgtgactcaggtccttttaggctgttgtgatgtctccattgatagaccggaacttgagtggtgattgaagctgaacgtttgaagcaaaa 25362417  T
Q  379 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    || ||||| |||||||  || |||||||||||||||||| ||||||||||||| ||||||||    
T  25362418 tctctatcgggtgcctaattgatcactgttggcggtgttagttctttgaggagttgttgtta 25362479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 200 - 440
Target Start/End: Original strand, 2707023 - 2707267
Alignment:
Q  200 tgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtc 299  Q
    ||||||||||||| |||||||||| | ||| ||  ||| ||||||| |||||||  ||  |||||| |||||||||||||||||||||| |||||||| |    
T  2707023 tgctccggtggttcgtgagttgaggggtgctttaatgacttgtgtcgggagtctagtgaaccgatcacttttgattcgaggtcgggagctagtttgtgac 2707122  T
Q  300 tcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgcctt 395  Q
    ||| || ||| |||||| |||   |||||||||    |||  | |||||||||||||||| |||||||||||||||||||| |||| ||   ||||| |     
T  2707123 tcatgtccttttaggcttttgcattgtctcctccgaaagatcgtaacttgagtggtggtcaaagctgaacgtttgaagcaaaatcattactgggtgctta 2707222  T
Q  396 ttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
     || || |||||||| |||||||||| | ||||||||| ||||||    
T  2707223 attgattactgttggtggtgttggttatctgaggagctattgtta 2707267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 17218822 - 17218921
Alignment:
Q  341 acttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||  |||||||  ||  ||||||||||||||||||||||||||| ||| ||||||||    
T  17218822 acttgagtggtggtcgaagctgaacttttgaagcaaaatcactattgggtgcctaattgttcactgttggcggtgttggttctttgatgagttgttgtta 17218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 18557491 - 18557577
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgag 279  Q
    ||||||| | ||| ||||| | |||||||||| | |||| |||||||||||||| |||||| |||||||||||| |||||||||||||    
T  18557491 aaggtgtctactctggtgggtcgtgagttgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgag 18557577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 433
Target Start/End: Complemental strand, 2334752 - 2334625
Alignment:
Q  311 taggctattgtgatgtctcctc-ag--actgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcact-g 406  Q
    |||||| ||||||||||||||| ||  || |||||||||||||||||||||||||  |||| ||||||  ||||||||| | || ||  || ||||||      
T  2334752 taggctgttgtgatgtctcctcgagttaccgaaacttgagtggtggtcgaagctgtgcgttggaagcattatcactatcggatgtctaattgatcactca 2334653  T
Q  407 ttggcggtgttgg-ttctttgaggagct 433  Q
    ||||||||||||| ||||||||||||||    
T  2334652 ttggcggtgttggtttctttgaggagct 2334625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 1223089 - 1223124
Alignment:
Q  405 tgttggcggtgttggttctttgaggagctgttgtta 440  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1223089 tgttggcggtgttggttctttgaggagctattgtta 1223124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 31721688 - 31721726
Alignment:
Q  249 agtcttatgggccgatcgcttttgattcgaggtcgggag 287  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  31721688 agtctaatgggccgatcgcttttgattcgagatcgggag 31721726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 192 - 436
Target Start/End: Original strand, 38709907 - 38710154
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    |||||||||| || ||||||| |||||||||| | ||||||||||  |||| || |||||||| ||||| ||||||||||||||||||||||||||||||    
T  38709907 aaggtgtttgttctggtggttcgtgagttgaggggtgcctttttgccttgtttcgggagtctt-tgggctgatcgcttttgattcgaggtcgggagcaag 38710005  T
Q  292 tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatca 387  Q
    |||||| ||||||| ||| |||| | |||||||||||||||    |||| | ||||||||||||||||||||||||||| ||||||||| ||||| ||      
T  38710006 tttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattg 38710105  T
Q  388 ggtgccttttttatcactgttggcggtgttggttctttgaggagctgtt 436  Q
    ||||||   || ||||||||||||||||||||||||||||||| |||||    
T  38710106 ggtgccaaattgatcactgttggcggtgttggttctttgaggaactgtt 38710154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 239 - 436
Target Start/End: Complemental strand, 4397550 - 4397349
Alignment:
Q  239 ttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----ag 334  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| |||||| |||||||||||||||    ||    
T  4397550 ttgtgtcgggagtcttatgtgccgatcgcttttgattcgagttcgggagtaagtttgtgactcaggtccttttaggctgttgtgatgtctcctccgatag 4397451  T
Q  335 actgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctg 434  Q
    || | | ||||||||||||||||||||||||||||||||||| ||||||||| |||||||  || |||| ||||||||||||||||||||||||||| ||    
T  4397450 accggatcttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcattgttggcggtgttggttctttgaggagttg 4397351  T
Q  435 tt 436  Q
    ||    
T  4397350 tt 4397349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 192 - 440
Target Start/End: Original strand, 4391561 - 4391814
Alignment:
Q  192 aaggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaag 291  Q
    ||||||| || || ||||||| |||||||||| | ||| ||||||  ||||||| |||||||| |||||| ||||||||||||||| |||||||||||||    
T  4391561 aaggtgtctgttctggtggttcgtgagttgaggggtgcatttttgccttgtgtcgggagtcttgtgggccaatcgcttttgattcggggtcgggagcaag 4391660  T
Q  292 -tttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgt-ttgaagcaacatcactat 385  Q
     |||||| |||||| |||| |||||| |||||||||||||||    |||| | |||||||||||||||||||| ||| | | ||||||||| |||  |||    
T  4391661 ttttgtgactcagg-tcttttaggctgttgtgatgtctcctccgatagacaggaacttgagtggtggtcgaagttgagcatcttgaagcaaaatctttat 4391759  T
Q  386 caggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 440  Q
    || |||| |  |||  ||||||||| |||||||||||||||||||||| ||||||    
T  4391760 catgtgcttgattttccactgttggtggtgttggttctttgaggagcttttgtta 4391814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 38564857 - 38564951
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagc 288  Q
    |||||||||||| | ||| | |||||||||| | |||||||| ||||||||| ||||||||  |||||||||||||||||||||||| ||||||||    
T  38564857 aggtgtttgctcagatgggtcgtgagttgaggggtgcctttt-gatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggagc 38564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 13987577 - 13987677
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||||||| |||||||||| | ||||||  ||||||||||| ||| |||  |||||| |||||||||| |||||| |||||||| ||||    
T  13987577 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggagctagtt 13987676  T
Q  294 t 294  Q
    |    
T  13987677 t 13987677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 17891487 - 17891567
Alignment:
Q  214 gtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagttt 294  Q
    |||||||||| | |||| | | ||| |||||  ||||||| |||| |||||| ||||||||||||| | ||||||||||||    
T  17891487 gtgagttgaggggtgccgtgtagatgtgtgttgggagtctgatggaccgatcacttttgattcgagattgggagcaagttt 17891567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 30655569 - 30655609
Alignment:
Q  247 ggagtcttatgggccgatcgcttttgattcgaggtcgggag 287  Q
    |||||||  |||||||||||||||||||||||| |||||||    
T  30655569 ggagtctagtgggccgatcgcttttgattcgagatcgggag 30655609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 7546554 - 7546454
Alignment:
Q  194 ggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcgggagcaagtt 293  Q
    ||||| ||||| ||||||| |||||||||| | ||||||||| ||| ||||   ||||||  ||| |||||| ||||||||||||| |||| ||| ||||    
T  7546554 ggtgtctgctctggtggttcgtgagttgaggggtgccttttttattggtgttgagagtctggtggaccgatcacttttgattcgagatcggaagctagtt 7546455  T
Q  294 t 294  Q
    |    
T  7546454 t 7546454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 12129173 - 12129264
Alignment:
Q  193 aggtgtttgctccggtggtttgtgagttgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcggg 285  Q
    |||||| | ||| ||||| | |||||||||  | |||||| || ||||||||||| ||||| |||| |||||| ||||||||||||| |||||    
T  12129173 aggtgtcttctctggtgggtcgtgagttgatgggtgccttattaatttgtgtcag-agtctgatggtccgatcacttttgattcgagatcggg 12129264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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