View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11790_high_3 (Length: 483)
Name: NF11790_high_3
Description: NF11790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11790_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 39091057 - 39090590
Alignment:
| Q |
17 |
atctcaaatcaatgaatgagatcaattaatgcatctaaaaatgtgtagttt------tgt-------tttttgtttgtgttatcaattaatacaatttct |
103 |
Q |
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| T |
39091057 |
atctcaaatcaatgaatgagatcaattaatgcatctaaaaatgtgtagtttggattatgtagttttgtttttgtttgtgttatcaattaatacaatttct |
39090958 |
T |
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| Q |
104 |
tgtacaataatctttccatctatccatagtgaccacacaacagacaaccaaatcagatgtctgattctctttaactttttatctcgaaacatatcaccat |
203 |
Q |
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| T |
39090957 |
tgtacaataatctttccatctatccatagtgaccacacaacagacaaccaaatcagatgtctgattctctttaactttttatctcgaaacatatcaccat |
39090858 |
T |
|
| Q |
204 |
gttgatgcaagttagctacactcgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgccgatttaaaa |
303 |
Q |
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| T |
39090857 |
gttgatgcaagttagctacacccgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgccgatttaaaa |
39090758 |
T |
|
| Q |
304 |
gagaaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattcaagcagctgat |
403 |
Q |
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| T |
39090757 |
gagaaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattcaagcagctgat |
39090658 |
T |
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| Q |
404 |
ccttctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctcctt |
471 |
Q |
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| T |
39090657 |
ccttctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctcctt |
39090590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 467
Target Start/End: Complemental strand, 39081430 - 39081229
Alignment:
| Q |
273 |
tttttgcagcatcttacacgccgatttaaaagagaaccctgaggaagaatcatgtatg-------catgcccaattgtctgtcat-tccggcctgcacat |
364 |
Q |
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||||||||||| |||| ||| |||||||| ||||||||||| | ||||||||||||| | | |||||||||| ||| ||| ||||||| | |
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| T |
39081430 |
tttttgcagcagcttatacgtcgatttaacagagaaccctgcagcagaatcatgtatgatgtatcccttcccaattgtc---catatcctgcctgcataa |
39081334 |
T |
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| Q |
365 |
ctgtccttgcaatgacagattctaattcaagcagctgatccttct--catacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctac |
462 |
Q |
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| T |
39081333 |
ccgtccctgcaatgacagattctaattcaagcagctgatccttctcccaaacgaacaatgatcacctccagttccagtgccaaatccacatgttgcctac |
39081234 |
T |
|
| Q |
463 |
acgct |
467 |
Q |
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|||| |
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| T |
39081233 |
gcgct |
39081229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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