View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11790_low_6 (Length: 404)
Name: NF11790_low_6
Description: NF11790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11790_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 35408378 - 35408005
Alignment:
| Q |
16 |
cagagaggacccaaatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408378 |
cagagaggacccaaatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtga |
35408279 |
T |
|
| Q |
116 |
tgatcctgtgtatgcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagt |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408278 |
tgatcctgtgtacgcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagt |
35408179 |
T |
|
| Q |
216 |
aaattactaatattat---gattnnnnnnncatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatataacttgaagtac |
312 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408178 |
aaattactaatattattatgattaaaaaaacatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatataacttgaagtac |
35408079 |
T |
|
| Q |
313 |
aaataaagcaatcttgattacattcaattctcaaattaaaaatttattaaaacgattcggtgtcaagttgaatt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408078 |
aaataaagcaatcttgattacattcaattctcaaattaaaaatttattaaaacgattcggtgtcaagttgaatt |
35408005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University