View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11790_low_8 (Length: 295)

Name: NF11790_low_8
Description: NF11790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11790_low_8
NF11790_low_8
[»] chr4 (7 HSPs)
chr4 (16-279)||(28587084-28587347)
chr4 (16-152)||(28592397-28592533)
chr4 (160-279)||(28592182-28592301)
chr4 (16-152)||(32493671-32493807)
chr4 (160-279)||(28595684-28595804)
chr4 (16-152)||(28595459-28595595)
chr4 (160-279)||(32493905-32494024)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 28587347 - 28587084
Alignment:
Q  16 aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg 115  Q
    |||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28587347 aagagtgcacgtccaaatgttaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg 28587248  T
Q  116 cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaagcaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28587247 cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaa 28587148  T
Q  216 aagtttggccaataccgaccttccgttatttacagacgatcttacaactcttatatctcatttt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28587147 aagtttggccaataccgaccttccgttatttacagacgatcttacaactcttatatctcatttt 28587084  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 28592533 - 28592397
Alignment:
Q  16 aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28592533 aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaaatttgtcccggagttgtgtcttgcg 28592434  T
Q  116 cggacatacttgctgtggcagcacgtgatgcatcatt 152  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28592433 cggacatactagctgtggcagcacgtgatgcatcatt 28592397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 28592301 - 28592182
Alignment:
Q  160 ggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta 259  Q
    ||||| || |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  28592301 ggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttacggacgatctta 28592202  T
Q  260 caactcttatatctcatttt 279  Q
    ||||||||||||||||||||    
T  28592201 caactcttatatctcatttt 28592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 32493671 - 32493807
Alignment:
Q  16 aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg 115  Q
    |||| ||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||| || | || |||||||| || || |||||||||||||| |    
T  32493671 aagagtgcacttccaaatattaactctgtaagaggatttgaagttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtg 32493770  T
Q  116 cggacatacttgctgtggcagcacgtgatgcatcatt 152  Q
    | |||||  | || || ||||| ||||||||||||||    
T  32493771 ctgacatcgtagcagtagcagctcgtgatgcatcatt 32493807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 28595684 - 28595804
Alignment:
Q  160 ggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaag-caaaagtttggccaataccgaccttccgttatttacagacgatctt 258  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||  || ||  ||||||||||||||| | ||||||||   ||||||||| |||||     
T  28595684 ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttacagatgatcta 28595783  T
Q  259 acaactcttatatctcatttt 279  Q
    |||||||| ||||| ||||||    
T  28595784 acaactctaatatcccatttt 28595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 28595459 - 28595595
Alignment:
Q  16 aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg 115  Q
    |||| ||||||||| ||| |||| || |||||||| ||  || | ||||||||||||||| |||| || |||||||| ||||| |||||||||||||| |    
T  28595459 aagagtgcacttccaaatcttaattctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtgtcttgtg 28595558  T
Q  116 cggacatacttgctgtggcagcacgtgatgcatcatt 152  Q
    | |||||  | ||  | || |||||||||||||||||    
T  28595559 ctgacattgtagcaatagcggcacgtgatgcatcatt 28595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 32493905 - 32494024
Alignment:
Q  160 ggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta 259  Q
    ||||| ||||||||||| |||||||| |||||||||||||| |||   || |||||||||  ||||||| | ||||||||   |||||| || ||||| |    
T  32493905 ggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacggatgatctaa 32494004  T
Q  260 caactcttatatctcatttt 279  Q
    ||||||||||| | ||||||    
T  32494005 caactcttatagcccatttt 32494024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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