View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_high_18 (Length: 223)
Name: NF11791_high_18
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_high_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38825170 - 38825392
Alignment:
| Q |
1 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcagacggtgtggaattgtttgactggttgggggttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
38825170 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcatacggtgtggaattgtttgactgtttgggggttaa |
38825269 |
T |
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| Q |
101 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcacaactcaaaaaagcccttatgcctgatggtttacttatgggagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38825270 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcgcaactcaaaaaagcccttatgcctgatggtttacttatgggagg |
38825369 |
T |
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| Q |
201 |
agagtattttcatactcgttgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38825370 |
agagtattttcatactcgttgtt |
38825392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30367168 - 30367390
Alignment:
| Q |
1 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcagacggtgtggaattgtttgactggttgggggttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30367168 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcagacggtgtggaattgtttgactgattgggggttaa |
30367267 |
T |
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| Q |
101 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcacaactcaaaaaagcccttatgcctgatggtttacttatgggagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
30367268 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcgcaacttaaaaaagcccttatgcttgatggtttacttatgggagg |
30367367 |
T |
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| Q |
201 |
agagtattttcatactcgttgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30367368 |
agagtattttcatactcgttgtt |
30367390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23218601 - 23218379
Alignment:
| Q |
1 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcagacggtgtggaattgtttgactggttgggggttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23218601 |
aagttaaacaagaagattttaaatttttgtcaagtgccaggccactcaggagatgtaatggctcagacggtgtggaattgtttgactgcttgggggttaa |
23218502 |
T |
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| Q |
101 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcacaactcaaaaaagcccttatgcctgatggtttacttatgggagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
23218501 |
ataaggtgctcactatgacagtcgataatgcatcatctaatgatgttggaatatcgcaacttaaaaaagcccttatgcttgatggtttacttatgggagg |
23218402 |
T |
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| Q |
201 |
agagtattttcatactcgttgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
23218401 |
agagtattttcatactcgttgtt |
23218379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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