View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11791_high_4 (Length: 617)

Name: NF11791_high_4
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11791_high_4
NF11791_high_4
[»] chr5 (8 HSPs)
chr5 (19-617)||(10210689-10211288)
chr5 (22-297)||(9683918-9684209)
chr5 (19-101)||(10213384-10213466)
chr5 (452-555)||(9683529-9683633)
chr5 (22-94)||(13855525-13855597)
chr5 (580-617)||(10108439-10108476)
chr5 (196-298)||(9677242-9677344)
chr5 (196-285)||(10213182-10213271)


Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Complemental strand, 10211288 - 10210689
Alignment:
Q  19 tggaaagacttacttaaaacaaaagaaggaatagatcgtttagctcaacacagctcatctgttagaaggtgagctcttattcacgtgttacatttgcctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10211288 tggaaagacttacttaaaacaaaagaaggaatagatcgtttagctcaatgcagctcatctgttagaaggtgagctcttattcacgtgttacatttgcctc 10211189  T
Q  119 gactttttattcaagggatctcgattgatgtttttcaaaagatacttatctatgttcttattctagtgcaccaaagactttactttgtcctatttatggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10211188 gactttttattcaagggatctcgattgatgtttttcaaaagatacttatctatgttcttattctagtgcaccaaagactttactttgtcctatttatggt 10211089  T
Q  219 gaaggaaaactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaattttataggatttatgagtctcttctgtttcaggaaat 318  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10211088 gaaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttatgagtctcttctgtttcaggaaat 10210989  T
Q  319 caagagtgtagttatagtcaaagtgatgatgaaatttaattgttggtagactgggatacctcaattagtgaagccattatctttgtgctgatt-ttggtt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||    
T  10210988 caagagtgtagttatagtcaaagtgatgatgaaatttaattgttggtagattgggatacctcaattagtgaagccattatctttgtgctgattgtttgtt 10210889  T
Q  418 gtcataatatcaatatatcttttaagttaagaacttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttcttttttcatattttact 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10210888 gtcataatatcaatatatcttttaagttaagaacttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttcttttttcatattttact 10210789  T
Q  518 ggccatctaaatgacatcattgactatttccttgcttacatattttaaaaaagtaatacttattgttgtgttttgttaaacatatgtgcttatacacatc 617  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10210788 ggccatctaaatgaaatcattaactatttccttgcttacatattttaaaaaagtaatacttatggttgtgttttgttaaacatatgtgcttatacacatc 10210689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 9684209 - 9683918
Alignment:
Q  22 aaagacttacttaaaacaaaagaaggaatagatcgtttagctcaacacagctcatctgttagaaggtgagctcttattca-----------cgtgttaca 110  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||            ||||||||    
T  9684209 aaagatttactgaaaacaaaagatggaatagatcgtttagctcaatacagctcatcggttggaaggtgagttcttattcaatttgtttcatggtgttaca 9684110  T
Q  111 tttgcctcgactttttattcaagggatctcgattgatgtttttcaaaagatacttatctatgttct------tattctagtgcaccaaagactttacttt 204  Q
    ||||||| ||  ||||||||||||||||   ||| || ||||||||  ||||||||||| |||| |      ||| | | ||| ||   | |||| ||||    
T  9684109 tttgccttgatgttttattcaagggatccaaattaatatttttcaactgatacttatctttgttttttcaggtatcccaatgccccgggggctttgcttt 9684010  T
Q  205 gtcctatttatggtgaaggaaaactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaattttataggatttatga 297  Q
     ||||||||||||||||||  |||||| ||| |||||| |||||||||||||| |||||||||| |||||||| || |||| |||||||||||    
T  9684009 atcctatttatggtgaaggggaactaccacaagctttttgtcgtcgtgctgctgtcaaaggttgcatttatgt-aagtttaaaggatttatga 9683918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 10213466 - 10213384
Alignment:
Q  19 tggaaagacttacttaaaacaaaagaaggaatagatcgtttagctcaacacagctcatctgttagaaggtgagctcttattca 101  Q
    |||||||||||| |||||||||||||  ||||| |||||||||||||| |||||||| | ||| ||||||||| |||||||||    
T  10213466 tggaaagacttagttaaaacaaaagaccgaatatatcgtttagctcaatacagctcagcggttggaaggtgagttcttattca 10213384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 555
Target Start/End: Complemental strand, 9683633 - 9683529
Alignment:
Q  452 ttaagatgaaactaattcgtccctgatcttttcatatcaatgtttgttc-ttttttcatattttactggccatctaaatgacatcattgactatttcctt 550  Q
    |||||||||||| |||| || |||| |||||| ||||||||||||| || |||| | ||||||||  | || |||||||||| ||||| |||||||||||    
T  9683633 ttaagatgaaaccaattagttcctgttcttttgatatcaatgtttggtcattttctgatattttatggtccgtctaaatgacttcattaactatttcctt 9683534  T
Q  551 gctta 555  Q
    |||||    
T  9683533 gctta 9683529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 13855525 - 13855597
Alignment:
Q  22 aaagacttacttaaaacaaaagaaggaatagatcgtttagctcaacacagctcatctgttagaaggtgagctc 94  Q
    |||||||||||||| ||||||||  ||||| |||||||||||| |  ||||||||| ||| ||||||||||||    
T  13855525 aaagacttacttaacacaaaagacagaataaatcgtttagctcgatgcagctcatcggttggaaggtgagctc 13855597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 10108439 - 10108476
Alignment:
Q  580 ttgttgtgttttgttaaacatatgtgcttatacacatc 617  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10108439 ttgttgtgttttgttaaacataagtgcttatacacatc 10108476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 9677344 - 9677242
Alignment:
Q  196 ctttactttgtcctatttatggtgaaggaaaactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaattttataggatttat 295  Q
    |||| |||| ||||||||||||||||||| ||| |  ||| |||||  | |||| | ||||| ||||||||   |||||||||| ||||| |||||||||    
T  9677344 ctttgctttatcctatttatggtgaaggagaaccaacacaagctttctgccgtcatactgctgtcaaaggtcacatttatgtaagttttaaaggatttat 9677245  T
Q  296 gag 298  Q
    |||    
T  9677244 gag 9677242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 10213271 - 10213182
Alignment:
Q  196 ctttactttgtcctatttatggtgaaggaaaactacgacaggcttttagtcgtcgtgctgctatcaaaggttgtatttatgtaaatttta 285  Q
    |||| |||| |||||| |||||||||||| |||||  ||| || ||| |||| |||||| || |||||||||| |||||| ||| |||||    
T  10213271 ctttgctttatcctatctatggtgaaggagaactaacacaagccttttgtcgccgtgcttctgtcaaaggttgcatttatttaagtttta 10213182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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