View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_low_1 (Length: 841)
Name: NF11791_low_1
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 38720246 - 38719860
Alignment:
| Q |
15 |
atggacatctagaaaatgatcgttggtgattacgattcttaatnnnnnnncacaatttcatataaataagaaataggaaatagatacattcttttattaa |
114 |
Q |
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| T |
38720246 |
atggacatctaaaaaatgatcgttggtgattacgattcttaataaaaaaacccaatttcatataaata-------ggaaatagatacattcttttattaa |
38720154 |
T |
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| Q |
115 |
aactcattgaaaataataagatctatctttggatcagactcatattagatgattttgacgctactctgttgttgataataattgttaaaaaaattattct |
214 |
Q |
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| T |
38720153 |
aactcattgaaaataataagatctacttttggatcagactcatattagatgattttgacgctactctgttgttgataataattgttaaaaaaattattct |
38720054 |
T |
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| Q |
215 |
acgaatttnnnnnnnnnnnnnt-------tggaaaaactcataaaccttatgggggtgaataatttacttttctatgatgaataaacataaaaaccttat |
307 |
Q |
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| T |
38720053 |
tcaaatttaaaaaaataataataataatttggaaaaactcataaaccttatgggggtgaataatttacttttctatgatgaataaacataaaaaccttat |
38719954 |
T |
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| Q |
308 |
aatgagccaatgtttcgaaaatgtgttgttgactgctattaatatatttcagtaatgattttttatgaaataaagtaattataattcaatatag |
401 |
Q |
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| T |
38719953 |
aatgagccaatgtttcgaaaatgtgttgttgactgatattaatatatttcagtaatgattttttatgaaataaagtaattataattcaatatag |
38719860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 462 - 640
Target Start/End: Complemental strand, 38719798 - 38719618
Alignment:
| Q |
462 |
ttaatggaagataatagtatgcaaaaaataatgaaaaatagaaggaaattattgaatatatcaaatttaatttag--ttatatttgattgtcnnnnnnnn |
559 |
Q |
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| T |
38719798 |
ttaatggaagataatagtatgcaaaaaataatgaaaaatagaaggaaattattgactatatcaaatttaatttagtattatatttgattgtcaaaaaaaa |
38719699 |
T |
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| Q |
560 |
nntcgtattatatttagtaaatatatttttactgagacaaaagttatcattttctttttctatatatgaaagtcaaaccaa |
640 |
Q |
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| T |
38719698 |
aatcgtattatatttagtaaatatatttttactgagacaaaagttatcattttctttttctatatttgaaagtcaaaccaa |
38719618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 713 - 818
Target Start/End: Complemental strand, 38719545 - 38719438
Alignment:
| Q |
713 |
gttgtgttaattggaatataa--gttaaaaaagcttttaaaatcgaatatttatttgtttattatctccgttatctttttcaattagatcctcttaacaa |
810 |
Q |
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| T |
38719545 |
gttgtgttaattggaatataatcgttaaaaaagcttttaaaatcgaatatttatttgtttattatctccgttatctttttcaattagatcctcttaacaa |
38719446 |
T |
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| Q |
811 |
agctatcc |
818 |
Q |
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| T |
38719445 |
agctatcc |
38719438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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