View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_low_11 (Length: 293)
Name: NF11791_low_11
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 54262855 - 54262628
Alignment:
| Q |
1 |
cactccaaaataaagtatcctctccgttccgcattatttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262855 |
cactccaaaataaagtatcctctccgttccgcattatttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaatttt |
54262756 |
T |
|
| Q |
101 |
ttacaccccacccactcacccccatttctttttccttacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaaatggtccctcac |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262755 |
ttacaccccactcactcacccccatttctttttccttacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaaatggtccctcac |
54262656 |
T |
|
| Q |
201 |
ctaaaacttgacaggatgctattcattt |
228 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
54262655 |
ctaaaagttgacaggatgctattcattt |
54262628 |
T |
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