View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_low_14 (Length: 273)
Name: NF11791_low_14
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 34029611 - 34029858
Alignment:
| Q |
19 |
tttcttcatagattcttccttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029611 |
tttcttcatagattcttccttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattg |
34029710 |
T |
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| Q |
119 |
ttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaacaccaagttggtcttttaatgcctccactgctcctatacttgatgctacta |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
34029711 |
ttcttagcatgttgatgaagtgacctaaaagcatagttccacctgcatacaccaagttggtcttttaaagcttccactgctcctatgcttgatgctacta |
34029810 |
T |
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| Q |
219 |
cccatgctcttgttgctgcactcattttatagtatttaagtacctttg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029811 |
cccatgctcttgttgctgcactcattttatagtatttaagtacctttg |
34029858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 34031546 - 34031770
Alignment:
| Q |
19 |
tttcttcatagattcttccttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattg |
118 |
Q |
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|||| ||||||||||||||||| |||| |||||||| || |||||||||||||| |||||||| ||||||||||| || |||| |||||||||||||||| |
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| T |
34031546 |
tttcctcatagattcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagaggacaatttcttggcttgagagtatgatctaatattg |
34031645 |
T |
|
| Q |
119 |
ttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaacaccaagttggtcttttaatgcctccactgctcctatacttgatgctacta |
218 |
Q |
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| T |
34031646 |
ttcttagcatgttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttggtcttttaatgcttccactgctcctatgcttgatgctacta |
34031745 |
T |
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| Q |
219 |
cccatgctcttgttgctgcactcat |
243 |
Q |
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|||| ||| |||||||||||||||| |
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| T |
34031746 |
cccaagcttttgttgctgcactcat |
34031770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 34026683 - 34026907
Alignment:
| Q |
19 |
tttcttcatagattcttccttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattg |
118 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |
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| T |
34026683 |
tttcctcatagattcttccttgcttctcttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttggccttagtgtatgatctgatattg |
34026782 |
T |
|
| Q |
119 |
ttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaacaccaagttggtcttttaatgcctccactgctcctatacttgatgctacta |
218 |
Q |
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|||||||||| ||||||| || ||||||| || |||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||| |||||| | |
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| T |
34026783 |
ctcttagcatgctgatgaaaggatctaaaagaatggttccacctgcatacaccaagttggtcttttaaggcctccactcctcctgtgcttaatgctatca |
34026882 |
T |
|
| Q |
219 |
cccatgctcttgttgctgcactcat |
243 |
Q |
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||| |||||| |||||||||||| |
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| T |
34026883 |
tccaagctcttactgctgcactcat |
34026907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 34034799 - 34034892
Alignment:
| Q |
126 |
catgttgatgaattgacctaaaagcatagttccacctgcaaacaccaagttggtcttttaatgcctccactgctcctatacttgatgctactac |
219 |
Q |
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||||||| || ||||||||||||||||||||||| || |||| || | ||| |||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
34034799 |
catgttgttgcattgacctaaaagcatagttccatctacaaatccctaattgatcttttaaggcctccacagctccaatgcttgatgcaactac |
34034892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 34034701 - 34034743
Alignment:
| Q |
19 |
tttcttcatagattcttccttggttcttttcaccttgttggaa |
61 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
34034701 |
tttcttcatagattcttccttgtttctcttccccttgttggaa |
34034743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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