View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_low_18 (Length: 245)
Name: NF11791_low_18
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23218240 - 23218001
Alignment:
| Q |
1 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggtggaatactagctatttaatgcttgatgctgcacttaaacacatgccaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23218240 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggttgaatactagctatttaatgcttgatgctgcacttaaacacatgccaacatt |
23218141 |
T |
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| Q |
101 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtctccctttgcctggggattgggaatatgtgcgctctattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23218140 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtctccctttgcctggggattgggaatatgtgcgctatattctc |
23218041 |
T |
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| Q |
201 |
ccctttttaaagctgttttacaatgctactgtgcgtctct |
240 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
23218040 |
ccctttttagagctgttttacaatgctactgtgcgtctct |
23218001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38825531 - 38825773
Alignment:
| Q |
1 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggtggaatactagctatttaatgcttgatgctgcacttaaacacatgccaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38825531 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggtggaatactagctatttaatgcttgatgctgcacttaaacacatgccaacatt |
38825630 |
T |
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| Q |
101 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtctccctttgcctggggattgggaatatgtgcgctctattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
38825631 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtttccctttgcctgtggattgggaatatgtgcgctctattctc |
38825730 |
T |
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| Q |
201 |
ccctttttaaagctgttttacaatgctactgtgcgtctctctg |
243 |
Q |
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||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
38825731 |
ccctttttagagttgttttataatgctactgtgcgtctctctg |
38825773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30367529 - 30367771
Alignment:
| Q |
1 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggtggaatactagctatttaatgcttgatgctgcacttaaacacatgccaacatt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30367529 |
aaaaagttcaatataagggttttgtcaacctagatattgaaacaaggtggaatactagctattcaatgcttgatgctgcacttaaacacatgccaacatt |
30367628 |
T |
|
| Q |
101 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtctccctttgcctggggattgggaatatgtgcgctctattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30367629 |
tgcattgttggagatgcaagatcatacatatgtcaaagagttacggaaagggaaaggtttccctttgcctggggattgggaatatgtgcgctctattctc |
30367728 |
T |
|
| Q |
201 |
ccctttttaaagctgttttacaatgctactgtgcgtctctctg |
243 |
Q |
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||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
30367729 |
ccctttttagagttgttttagaatgctactgtgcgtctctctg |
30367771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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