View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11791_low_3 (Length: 691)

Name: NF11791_low_3
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11791_low_3
NF11791_low_3
[»] chr8 (4 HSPs)
chr8 (22-348)||(34365146-34365476)
chr8 (186-445)||(39656687-39656962)
chr8 (561-678)||(39656442-39656559)
chr8 (364-399)||(34365080-34365115)
[»] chr7 (4 HSPs)
chr7 (242-445)||(39988265-39988469)
chr7 (242-445)||(3820451-3820671)
chr7 (561-678)||(3820789-3820906)
chr7 (561-651)||(39988057-39988147)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 34365476 - 34365146
Alignment:
Q  22 gaacaatcgaggaagaaagggtgcatgtaaattgccgatcttgttctttatatagaaaaatgtttttgtcctgttcggctgtggaattgtattcaaaagc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34365476 gaacaatcgaggaagaaagggtgcatgtaaattgccgatcttgttcttcatatagaaaaatgtttttgtcctgttcggctgtggaattgtattcaaaagc 34365377  T
Q  122 aatgcagccagaaaattaatcataatgtcgacacaatggagttgaagattgaatagtaaaacatggtggcattt-gggtaggtaggggaaagagtttctc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34365376 aatgcagccagaaaattaatcataatgtcgacacaatggagttgaagattgaatagtaaaacatggtggcatttagggtaggtaggggaaagagtttttc 34365277  T
Q  221 attataagaaag---nnnnnnnnnaccaatagattaaagacacacacaacttttaagatgatctacccacaccatatatttttccatatcatcttcaacc 317  Q
    |||||| |||||            ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||    
T  34365276 attataggaaagttttttttttttaccaatagattaaagacgcacacaacttttaagacggtctacccacatcatatattttttcatatcatcttcaacc 34365177  T
Q  318 tcacgagaaacagcaaaactacataaacatc 348  Q
    |||||||||||||||||||||||||||||||    
T  34365176 tcacgagaaacagcaaaactacataaacatc 34365146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 186 - 445
Target Start/End: Complemental strand, 39656962 - 39656687
Alignment:
Q  186 ggtggcattt-gggtaggtaggggaaagagtttctcattataagaaagnnnnnnnnnaccaatagattaaagacacacacaacttttaagatgatctacc 284  Q
    |||||||||| |||| ||||||||||||||||||  | |||| |||||         ||||||||||||||||| |||| ||||||||||||| ||||||    
T  39656962 ggtggcatttagggtgggtaggggaaagagtttcctactataggaaagtttttttttaccaatagattaaagacgcacataacttttaagatggtctacc 39656863  T
Q  285 cacaccatatatttttccatatcatcttcaacctcacgagaaacagcaaaactacataaa---------------catcaaaaacacnnnnnnnaacgta 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||       ||||||    
T  39656862 cacaccatatatttttccatatcatcttcaacctcacgagaaacagcaaaactacataaacatctaccacataaacatcaaaaacactttttttaacgta 39656763  T
Q  370 aacatatgaataaagtcaatttcaaaaaatccttcacaaattgttcatcttcttcatcattattttcatctttacc 445  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39656762 aacatatgaataaagtcaatttcagaaaatccttcgcaaattgttcatcttcttcatcattattttcatctttacc 39656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 561 - 678
Target Start/End: Complemental strand, 39656559 - 39656442
Alignment:
Q  561 cgcctctggattggccatttccatttccttcattttcgtttatctcttttaaccgaaataaaactcataaagctactggaattaactcatcattatctca 660  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39656559 cgcctctcgattggccatttccatttccttcattttcatttatatcttttaaccgaaataaaactcataaagctaccggaattaactcatcattatctca 39656460  T
Q  661 tttccttcattttcatct 678  Q
    ||||||||| ||||||||    
T  39656459 tttccttcactttcatct 39656442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 34365115 - 34365080
Alignment:
Q  364 aacgtaaacatatgaataaagtcaatttcaaaaaat 399  Q
    |||||||||||||||||||||||||||||| |||||    
T  34365115 aacgtaaacatatgaataaagtcaatttcagaaaat 34365080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 242 - 445
Target Start/End: Complemental strand, 39988469 - 39988265
Alignment:
Q  242 accaatagattaaagacacacacaacttttaagatgatctacccacaccatatatttttccatatcatcttcaacctcacgagaaacagcaaaactacat 341  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  39988469 accaatagattaaagacgcacacaacttttaagatggtctacccacaccgtatattttttcatatcatcttcaacctcacaagaaacagcaaaactacat 39988370  T
Q  342 aaacatcaaaaacac-nnnnnnnaacgtaaacatatgaataaagtcaatttcaaaaaatccttcacaaattgttcatcttcttcatcattattttcatct 440  Q
    |||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39988369 aaacatcaaaaacacttttttttaacgtaaacatatgaataaagtcaatttcagaaaatccttcacaaattgttcatcttcttcatcattattttcatct 39988270  T
Q  441 ttacc 445  Q
    |||||    
T  39988269 ttacc 39988265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 242 - 445
Target Start/End: Original strand, 3820451 - 3820671
Alignment:
Q  242 accaatagattaaagacacacacaacttttaagatgatctacccacaccatatatttttccatatcatcttcaacctcacgagaaacagcaaaact---- 337  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  3820451 accaatagattaaagacgcacataacttttaagatggtctacccacaccatatatttttccatatcatcttcaacctcacgagaaacagcaaaactacat 3820550  T
Q  338 -----------acataaacatcaaaaacac--nnnnnnnaacgtaaacatatgaataaagtcaatttcaaaaaatccttcacaaattgttcatcttcttc 424  Q
               |||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  3820551 aaacatctaccacataaacatcaaaaacactttttttttaacgtaaacatatgaataaagtcaatttcagaaaatccttcgcaaattgttcatcttcttc 3820650  T
Q  425 atcattattttcatctttacc 445  Q
    |||||||||||||||||||||    
T  3820651 atcattattttcatctttacc 3820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 561 - 678
Target Start/End: Original strand, 3820789 - 3820906
Alignment:
Q  561 cgcctctggattggccatttccatttccttcattttcgtttatctcttttaaccgaaataaaactcataaagctactggaattaactcatcattatctca 660  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3820789 cgcctctcgattggccatttccatttccttcattttcatttatatcttttaaccgaaataaaactcataaagctaccggaattaactcatcattatctca 3820888  T
Q  661 tttccttcattttcatct 678  Q
    ||||||||| ||||||||    
T  3820889 tttccttcactttcatct 3820906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 561 - 651
Target Start/End: Complemental strand, 39988147 - 39988057
Alignment:
Q  561 cgcctctggattggccatttccatttccttcattttcgtttatctcttttaaccgaaataaaactcataaagctactggaattaactcatc 651  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39988147 cgcctctggattggccatttccatttccttcattttcatttatctcttttaaccgaaataaaactcataaagctactggaattaactcatc 39988057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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