View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11791_low_5 (Length: 430)
Name: NF11791_low_5
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 39942745 - 39942344
Alignment:
| Q |
14 |
agaacttggagtcaccccatgttttaaaaattgattcaaacatca-agcagcgaggtttccaagtcatgttcaattgttttaaattgattgaacgaggac |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
39942745 |
agaacttggagtcatcccatgttttaaaaattgattcaaacatcacagcagggaggtttccaagtcatgttcaattgtttttaattgattgaaccaggac |
39942646 |
T |
|
| Q |
113 |
gaaaccacaatcaaactgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaatactgttattcattgaaaagatacaa |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
39942645 |
gaaaccgcaatcaaactgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaatactgttattcatagaaaagatacaa |
39942546 |
T |
|
| Q |
213 |
tacattgtttgattagttgatgcaacgagttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaagctgacaacaaatagaaatgcaatca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39942545 |
tacattgtttgattagttgatgcaacgagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaagctgacaacaaatagaaatgcaatca |
39942446 |
T |
|
| Q |
313 |
tccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaatagttggagtcattccaaacaagtagctaccaaaccc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39942445 |
tccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaaccc |
39942346 |
T |
|
| Q |
413 |
ac |
414 |
Q |
| |
|
|| |
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|
| T |
39942345 |
ac |
39942344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 211 - 414
Target Start/End: Original strand, 28740424 - 28740628
Alignment:
| Q |
211 |
aatacattgt-ttgattagttgatgcaacgagttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaagctgacaacaaatagaaatgcaa |
309 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28740424 |
aatacattgtattgattatttgatgcaacaagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaa |
28740523 |
T |
|
| Q |
310 |
tcatccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaatagttggagtcattccaaacaagtagctaccaaa |
409 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28740524 |
tcatccatcctaaaccaagaatcttaacatcattggaaccatcaaattctggaatttgttttgcaatagttggagtcattccaaacaagtagctaccaaa |
28740623 |
T |
|
| Q |
410 |
cccac |
414 |
Q |
| |
|
|||| |
|
|
| T |
28740624 |
tccac |
28740628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 240 - 414
Target Start/End: Original strand, 28750226 - 28750400
Alignment:
| Q |
240 |
agttagtgtacctttcggagtggaaccaccgaaaagagaccaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacat |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28750226 |
agttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgt |
28750325 |
T |
|
| Q |
340 |
cattggcagtgccagcttctggaatttgttttgcaatagttggagtcattccaaacaagtagctaccaaacccac |
414 |
Q |
| |
|
|||||||| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28750326 |
cattggcactgtcaaattctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccac |
28750400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 279 - 414
Target Start/End: Complemental strand, 51122775 - 51122640
Alignment:
| Q |
279 |
ccaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaatag |
378 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
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|
| T |
51122775 |
ccaagaaagctaacaacaaataaaaatgcaatcatccatcctaaatcaagactcttaacatcattgacagtgtcaaattctggaatttgttttgcaatag |
51122676 |
T |
|
| Q |
379 |
ttggagtcattccaaacaagtagctaccaaacccac |
414 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51122675 |
ttggactcattccaaacaagtagctaccaaacccac |
51122640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 28740203 - 28740363
Alignment:
| Q |
29 |
cccatgttttaaaaattgattcaaacatca-agcagcgaggtttccaagtcatgttcaattgttttaaattgattgaacgaggacgaaaccacaatcaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |||| | ||| |||| |
|
|
| T |
28740203 |
cccatgttttaaaaattgattcaaacatcgcagcagcgaggtttccaagtcatgttcaatcattataaattgattgaacgagggtgaaatcgcaaccaaa |
28740302 |
T |
|
| Q |
128 |
ctgtagatgttgctggttcagggttcaactagttgaaccatctgattcgatttttaaaata |
188 |
Q |
| |
|
||||||| ||||| |||||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
28740303 |
ctgtagacattgctcattcagggttcaattagctgaaccatctgatttgatttttaaaata |
28740363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 278 - 414
Target Start/End: Original strand, 34947074 - 34947210
Alignment:
| Q |
278 |
accaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaata |
377 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||| || ||||| |||||||||||||||| |
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|
| T |
34947074 |
accaagaaagctaacaacaaatagaaatccaatcatccatcctaaacaaagactcttaacatcattagcagtgtcaaattctgaaatttgttttgcaata |
34947173 |
T |
|
| Q |
378 |
gttggagtcattccaaacaagtagctaccaaacccac |
414 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34947174 |
gttggactcattccaaacaagtagctaccaaacccac |
34947210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 278 - 392
Target Start/End: Complemental strand, 30013204 - 30013090
Alignment:
| Q |
278 |
accaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaata |
377 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
30013204 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagattcttaacatcattggcagtgtcaaattctggaatttgttttgcaata |
30013105 |
T |
|
| Q |
378 |
gttggagtcattcca |
392 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
30013104 |
gttggactcattcca |
30013090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 278 - 392
Target Start/End: Complemental strand, 30072929 - 30072815
Alignment:
| Q |
278 |
accaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacatcattggcagtgccagcttctggaatttgttttgcaata |
377 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
30072929 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagattcttaacatcattggcagtgtcaaattctggaatttgttttgcaata |
30072830 |
T |
|
| Q |
378 |
gttggagtcattcca |
392 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
30072829 |
gttggactcattcca |
30072815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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