View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11791_low_7 (Length: 407)
Name: NF11791_low_7
Description: NF11791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11791_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 51224950 - 51224647
Alignment:
| Q |
11 |
aggacgccaaaagtgcaatcaaacctatttctttttatgaaaaagtcaaaccagataactaaccctacttcaatatcaagatgaaatgacattgttgtcc |
110 |
Q |
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| T |
51224950 |
aggaggccaaaagtgcaatcaagcctatttctttttatgaaaaagtcaaacgagataactaaccctacttcaatatcaagatgaaatgacattgttgtcc |
51224851 |
T |
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| Q |
111 |
ccatgctgttggctttatcacgttaaataattgttgttattgtatagttaattgtggagcctccttaaaaggaagataatattaacaatcttgtttttgt |
210 |
Q |
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| T |
51224850 |
ccatgatattggctttatcaccttaaataattgttgttattgtatagttaattgtggagcctccttaaaaggaagataatattaacaatcttgtttttgt |
51224751 |
T |
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| Q |
211 |
aatggattaaaaattggagaaatttttgaacnnnnnnnntggtgaatgttcttaaatttgatgtgtacaaatcactttaataagatttatgatgattaat |
310 |
Q |
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| T |
51224750 |
aatggattaaaaattggtgaaatttttgaacaaaaaaaatggtgaatgttcttaaatttgatgtgtacaa-----------aagatttatggtgattaat |
51224662 |
T |
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| Q |
311 |
tcacactgcgacgac |
325 |
Q |
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| T |
51224661 |
tcacactgcgacgac |
51224647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 51224377 - 51224344
Alignment:
| Q |
357 |
ttccactctaatatcaagttctcaatatattttt |
390 |
Q |
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| T |
51224377 |
ttccactctaatatcaagttctcaatatattttt |
51224344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 28903986 - 28903952
Alignment:
| Q |
66 |
taactaaccctacttcaatatcaagatgaaatgac |
100 |
Q |
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| T |
28903986 |
taactaaccctacttcaatatcaagatgaaatgac |
28903952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 28940381 - 28940347
Alignment:
| Q |
66 |
taactaaccctacttcaatatcaagatgaaatgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28940381 |
taactaaccctacttcaatatcaagatgaaatgac |
28940347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 16658433 - 16658399
Alignment:
| Q |
66 |
taactaaccctacttcaatatcaagatgaaatgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
16658433 |
taactaaccctacttcaatatcaagatgaaatgac |
16658399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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