View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11792_low_1 (Length: 492)
Name: NF11792_low_1
Description: NF11792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11792_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 38087144 - 38087616
Alignment:
| Q |
18 |
aaattgaccctcttttagttggtaatgtaattagtctcccgaatcaatcggtctatagataagatattgctttttcnnnnnnngaaaatatgcatttcaa |
117 |
Q |
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| T |
38087144 |
aaattgaccctcttttagttggcaatgtaattagtctcccgaatcaatcggt-tatagataagatattgctttttcaaaaaa-gaaaatatgcatttcaa |
38087241 |
T |
|
| Q |
118 |
taatttgtcaattgtatgctaggacagagttagaagggagaccaa--taagtcacaatacctgccaannnnnnnnnnnnnngttagtaatctattatatt |
215 |
Q |
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| T |
38087242 |
taatttgtcgattgtatgctaggacagagttagaagggagaccaacataagtcacaatacctgccaatttttattttttttgttagtatgctattatatt |
38087341 |
T |
|
| Q |
216 |
ttatgtgtgaattttatatgatattgtataatcggtttttacgactcaatatactaagtcttaaacacttaagttttaaggcttaattaattgcactaat |
315 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38087342 |
ttatgtgtggattttatatgatattgtataatcggtttttacgactcaatatactaagtcttaaacacttaagttttaaggcttaattaattgcactaat |
38087441 |
T |
|
| Q |
316 |
ctttagctnnnnnnnctgtaatattcataacaataatttcaatttatgattcctcattgcaattttactaaaaagattcaacttgttactagtgattttg |
415 |
Q |
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||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38087442 |
ctttaactaaaaaaactgtaatattcataacaataattccaatttatgattcctcattacaattttactaaaaagattcaacttgttactagtgattttg |
38087541 |
T |
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| Q |
416 |
ttagcacactctacggtctgagctactaccaacaattctatactcgaaatctcatcgtaaattaatcctcctatg |
490 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38087542 |
tttgcacactctacactctgagctactaccaacaattctatactcgaaatctcatcataaattaatcctcctatg |
38087616 |
T |
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