View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11792_low_2 (Length: 394)
Name: NF11792_low_2
Description: NF11792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11792_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 39443180 - 39442897
Alignment:
| Q |
5 |
caaaattgacagaggagtattttggaaagttagctggatggagttttctg------------cagaatttgaaaagcacaggcctctttaaataaaaaat |
92 |
Q |
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| T |
39443180 |
caaaattgacagaggagtattttggaaagttagttggatggagttttctgttgggagaagagcagaatttgaaaagcacaggcctctttaaataaaaaat |
39443081 |
T |
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| Q |
93 |
ctcccatttaattgacaattggctgaaataaatctacagaaaactcaatggacatgttatcgggaaaatctccatctctcttataggcttttgtttttcc |
192 |
Q |
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| T |
39443080 |
atcccatttaattgacaattgactgaaataaatctacagaaaactcaatggacatgtcatcgggaaaatctccatctctct--taggcttttggttttcc |
39442983 |
T |
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| Q |
193 |
cagaatcctcattaatggtttttagtgataaatcaattataaatatgagacagaagaaaccatggacattgaaatcattcaaggaa |
278 |
Q |
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| T |
39442982 |
cagaatcctcattaatggtttttagtgataaatcaattataaatatgaggcagaagaaaccatgggcattgaaatcattcaaggaa |
39442897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 39442898 - 39442832
Alignment:
| Q |
313 |
aattctgcaattcaaagttcaaacaatcctaatctttcttttttcctatgcggtttgccgtttgcgt |
379 |
Q |
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| T |
39442898 |
aattctgcaattcaaagttcaaacaatcctgatctttctttgttcctctgcgatttgccgtttgcgt |
39442832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 19287242 - 19287185
Alignment:
| Q |
258 |
acattgaaatcattcaaggaactctattatctaaaaccgaatctttgtgtactaaaat |
315 |
Q |
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| T |
19287242 |
acattgaaatcattcaagaaactctattatctaaaactgaatatttgtgtactaaaat |
19287185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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