View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11792_low_4 (Length: 229)
Name: NF11792_low_4
Description: NF11792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11792_low_4 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 6672681 - 6672486
Alignment:
| Q |
20 |
aggaatgaatactaacacctcaaacaaaagctaatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6672681 |
aggaatgaatactaacacctcaaacaaaagctaatattgctcttaatgttgctctgctacagcagatagcaacattaacaaaaattaagatttgaaatca |
6672582 |
T |
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| Q |
120 |
gaaaacaatactaacaccttcaagaaaaagttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaacaacatgataag |
219 |
Q |
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| T |
6672581 |
gaaaacaatactaacaccttaaagaaaaagt---taatgttgctctgc-ataacagctagtaacaagaacagaaattgagattttcaacaatatgataag |
6672486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 12592727 - 12592912
Alignment:
| Q |
22 |
gaatgaatactaacacctcaaa-caaaagctaatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatca- |
119 |
Q |
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| T |
12592727 |
gaatgaatactaacacctcaaagcaaaagctaatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgagattttaaataaa |
12592826 |
T |
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| Q |
120 |
-gaaaacaatactaacaccttcaagaaaaagttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
207 |
Q |
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| T |
12592827 |
taaaaacaataataacaccttaaagcaaaag---ccaatgttgctctgctacagcagctagcaacagtaacgaaaattgagatttttaa |
12592912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 30822383 - 30822539
Alignment:
| Q |
51 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaat-cagaaaacaatactaacacct--tcaagaaaa |
147 |
Q |
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| T |
30822383 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattaaaattttaaatagaaaaaacaatactaacaccttataaagaaaa |
30822482 |
T |
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| Q |
148 |
agttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
207 |
Q |
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| T |
30822483 |
ag---ccaatgttgtgctgctacagcacctagcaacattaacagaaattgagatttttaa |
30822539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 30813120 - 30813209
Alignment:
| Q |
51 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcag-aaaacaatactaacacctt |
139 |
Q |
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| T |
30813120 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgaaattttaaataggaaaaacaatactaacacctt |
30813209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 30813077 - 30813128
Alignment:
| Q |
21 |
ggaatgaatactaacacctcaaa-caaaagctaatattgctcttaatgttgc |
71 |
Q |
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| T |
30813077 |
ggaatgaatactaacacctcaaatcaaaagctaatgtttctattaatgttgc |
30813128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 18860 - 18719
Alignment:
| Q |
63 |
taatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcagaaaacaatactaacaccttcaagaaaaagttaataatgttgc |
162 |
Q |
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| T |
18860 |
taatgttgctctgctacaggagctagcaacaataacataaattgagattttaaatcagaaaacaatactatcaccttaaaggaaaag---ctaatgttgc |
18764 |
T |
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| Q |
163 |
tctgctataacagctagtaacaagaacagaaattgagatttttaa |
207 |
Q |
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| T |
18763 |
tctgctatagcagctagcaacattaacagaaactgagatttttaa |
18719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 27811659 - 27811812
Alignment:
| Q |
51 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcagaaaacaatactaacaccttcaagaaaaagt |
150 |
Q |
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| T |
27811659 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgaaattttaaataaaaaaacaatactaacaccttaaagcaaaag- |
27811757 |
T |
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| Q |
151 |
taataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
207 |
Q |
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| T |
27811758 |
--ccaatgttgcgctgctacagcacctagaaacattaacggaaattgagatttttaa |
27811812 |
T |
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