View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_13 (Length: 440)
Name: NF11793_high_13
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 31479011 - 31479424
Alignment:
| Q |
18 |
ttttgtgcatgtagtgaatccttcaaatatagcagaacttctgcgtaatcagcaagggcttgtgctgagtttaaatagccgtaagatgcgttaaagctgg |
117 |
Q |
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| T |
31479011 |
ttttgtgcatgtagtgaatccttcaaatatagcagaacttctgcgtaatcagcaagggcttgtgctgagtttaaatagccgtaagatgcgttaaagctgg |
31479110 |
T |
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| Q |
118 |
gcactgacttcccgtagtaccggtgctaacaagaaaattaaaagtggtatcagaatcgtaaaactaatttgatttagatcaatgagtgtcaaaagaaata |
217 |
Q |
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| T |
31479111 |
gcactgacttcccgtagtaccggtgctaacaagaaaattaaaagttgtatcagaatcgtaaaactaatttgattttgatcaatgagtgtcaaaagaaata |
31479210 |
T |
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| Q |
218 |
gtcttctatttagtacctcaatgtatactagtagagctttaaaagaagtggcattatccatcataaaaccaagcgtattaacaatgtcatcttctccacc |
317 |
Q |
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| T |
31479211 |
gttttctatttagtacctcaatgtatactagtagagctttaaaagaagtggcattatccgtcataaaaccaagtgtattaacaatgtcatcttctccacc |
31479310 |
T |
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| Q |
318 |
caaataagcaaatattggggcactagaattagcacctctccaataattgtaatttataatatatctctgtttaaaggttttgtagctatctgatagatag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31479311 |
caaataagcaaatattggggcactagaattagcaccaccccaataattgaaatttataatatatctttgtttaaaggttttgtagctatctgatagatag |
31479410 |
T |
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| Q |
418 |
ttgaagtggtccaa |
431 |
Q |
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| T |
31479411 |
ttgaagtggtccaa |
31479424 |
T |
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