View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_18 (Length: 401)
Name: NF11793_high_18
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_18 |
 | |
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| [»] scaffold0337 (2 HSPs) |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 115 - 393
Target Start/End: Original strand, 21729042 - 21729325
Alignment:
| Q |
115 |
tgcatacgcattggttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatat |
214 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||| | |||||||| ||||||||| |
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| T |
21729042 |
tgcatacgcattggttcagtcctctcgatcgccgcttctccaaaaaatagagaaaaaaagataatcaaagaataaacaaacataagaaaccgaaccatat |
21729141 |
T |
|
| Q |
215 |
ttttcatcctttgaatgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctattag |
314 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
21729142 |
ttttcatcctttgaatgtactaaagggatttattttgatcattttatagttaaaactcgaatgtttttttaatttcaattcaatagttatttcctattag |
21729241 |
T |
|
| Q |
315 |
aagtaacaaaaagcaatttaacaaagaataattaattttaaatgtctcc-----acatgttgtgtgtgacccttcatctcactc |
393 |
Q |
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| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||| |
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| T |
21729242 |
aggtaacaaaaagcaatttaaaaaagaataattaattttaaatgtctccgatcaatatgttatgtgtgacccttcagctcactc |
21729325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 357
Target Start/End: Original strand, 21848155 - 21848382
Alignment:
| Q |
129 |
ttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatatttttcatcctttga |
228 |
Q |
| |
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||||||| |||| ||||||||||| |||||| ||| |||||||||||||||||||| | |||||| ||| |||||| ||||||||||||| |
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| T |
21848155 |
ttcagtcctctcaaacgccgcttcaccaaaaaataaagaaagaaagataatcaaagaataaacaaacagaagaaattgagccatatgtttcatcctttga |
21848254 |
T |
|
| Q |
229 |
atgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctattagaagtaacaaaaagc |
328 |
Q |
| |
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| |||||||| |||||||||||||| |||||||||||| | ||||| |||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
21848255 |
acgtactaaagagatttattttgatccttttatagttaaaacctgaatgttttgttaatttcaattaaatagttatttgctcttagaagtaacaaaaagc |
21848354 |
T |
|
| Q |
329 |
aatttaacaaagaataattaattttaaat |
357 |
Q |
| |
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||||||| ||||| ||||||||||||||| |
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| T |
21848355 |
aatttaa-aaagagtaattaattttaaat |
21848382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 393
Target Start/End: Original strand, 22183668 - 22183938
Alignment:
| Q |
129 |
ttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatatttttcatcctttga |
228 |
Q |
| |
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||||||| ||| |||| ||||||||||| | |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
22183668 |
ttcagtcctcttgaaccacgcttctccaagaaatagagaaagaaagataatcaaagaataaataaacagaagaaactgagccatatttttcatcctttga |
22183767 |
T |
|
| Q |
229 |
atgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctattagaagtaacaaaaagc |
328 |
Q |
| |
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||||| |||| |||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||| || | |||| || | |||||| |
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| T |
22183768 |
atgtagtaaagagatttattttgatccttttatagttaaaacttgaatgcttttttaatttcaattcaatagttatttgctctcagaactagcgaaaagc |
22183867 |
T |
|
| Q |
329 |
aatttaacaaagaataattaattttaaatgtctcc------acatgttgtgtgtgacccttcatctcactc |
393 |
Q |
| |
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||||||| ||||| ||||||||| |||||| ||| | |||||| ||||||||||||| ||||||| |
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| T |
22183868 |
aatttaaaaaagagtaattaattcaaaatgtgtccgatcaaatatgttgcgtgtgacccttcaactcactc |
22183938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 129 - 393
Target Start/End: Complemental strand, 20149160 - 20148890
Alignment:
| Q |
129 |
ttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatatttttcatcctttga |
228 |
Q |
| |
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||||||| ||| |||| ||||||||||| | |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
20149160 |
ttcagtcctcttgaaccacgcttctccaagaaatagagaaagaaagataatcaaagaataaataaacagaagaaactgagccatatttttcatcctttga |
20149061 |
T |
|
| Q |
229 |
atgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctattagaagtaacaaaaagc |
328 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||| || ||||| ||||||| ||||||||||||| | |||||| || |||||||| |
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| T |
20149060 |
atgtagtaaagagatttattttgatccttttatagttaaaacttgaatgcttttttaatttcagttcaatagttattggcagttagaaatagcaaaaagc |
20148961 |
T |
|
| Q |
329 |
aatttaacaaagaataattaattttaaatgtctcc------acatgttgtgtgtgacccttcatctcactc |
393 |
Q |
| |
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||||||| ||||| ||||||||| |||||| ||| | |||||| ||||||||||||| ||||||| |
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| T |
20148960 |
aatttaaaaaagagtaattaattcaaaatgtgtccgatcaaatatgttgcgtgtgacccttcaactcactc |
20148890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 21728947 - 21729001
Alignment:
| Q |
19 |
gtaactacattgtcaaacaaagaaaaaaattactaaaatatgatgaatagggtgt |
73 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21728947 |
gtaactacattgtcaaataaagaaaaaaattactaaaatatgatgaatagggtgt |
21729001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 21698899 - 21698968
Alignment:
| Q |
198 |
aagaaactgaaccatatttttcatcctttgaatgtactaaaaggatttattttgatcattttatagttaa |
267 |
Q |
| |
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|||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
21698899 |
aagaaattgagccatatttttcatcctttaaatgtactaaagatatttattttgatcattttatagttaa |
21698968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 21692217 - 21692285
Alignment:
| Q |
115 |
tgcatacgcattggttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaa |
183 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| |
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| T |
21692217 |
tgcatacacattgtttcagtcctctcgaatgccgcttctccaagaaatagagaaagaaagataatcaaa |
21692285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 346
Target Start/End: Complemental strand, 5839 - 5605
Alignment:
| Q |
115 |
tgcatacgcatt---ggttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaacca |
211 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||| | | ||||||||| ||| |
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| T |
5839 |
tgcatacgcattatgggttcagtcctctcgtacgctgcttctccaaaaaatagagaaagaaagataatcaaggaataaataaacagaagaaactgtgcca |
5740 |
T |
|
| Q |
212 |
tatttttcatcctttgaatgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctat |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||| || | |
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| T |
5739 |
tatttttcatcctttgaatgtactaaagagatttattttgatccttttatagttaaaacttgaatgcttttttaatttcaattcaatagttatttgctct |
5640 |
T |
|
| Q |
312 |
tagaagtaacaaaaagcaatttaacaaagaataat |
346 |
Q |
| |
|
|||| || | ||||||||||||| ||||| |||| |
|
|
| T |
5639 |
cagaactagcgaaaagcaatttaaaaaagagtaat |
5605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 359
Target Start/End: Complemental strand, 18498 - 18268
Alignment:
| Q |
129 |
ttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatatttttcatcctttga |
228 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| | |||||||||||||||||||||| | ||||| |||| |||||||||||||||||| | |
|
|
| T |
18498 |
ttcagtcctctctaacgctgcttctccaaaaaaaagagaaagaaagataatcaaagaataaataaacagaagaagctgagccatatttttcatcctttaa |
18399 |
T |
|
| Q |
229 |
atgtactaaaaggatttattttgatcattttatagttaaggctcgaatgnnnnnnnaatttcaattcaatagttatttcctattagaagtaacaaaaagc |
328 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||||| || ||||| |||| || |||||||||||||| || | |||| || | |||||| |
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|
| T |
18398 |
atctactaaagagatttattttgatccttttatagttaaaacttgaatgcttttttaattccagttcaatagttatttgctttcagaattagcgaaaagc |
18299 |
T |
|
| Q |
329 |
aatttaacaaagaataattaattttaaatgt |
359 |
Q |
| |
|
||||||| ||||| |||||||||| |||||| |
|
|
| T |
18298 |
aatttaaaaaagagtaattaatttaaaatgt |
18268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 68066 - 68204
Alignment:
| Q |
129 |
ttcagtcgtctcgaacgccgcttctccaaaacatagagaaagaaagataatcaaagnnnnnnnnnncctaagaaactgaaccatatttttcatcctttga |
228 |
Q |
| |
|
||||||| ||| |||| |||||||||||| | || ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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|
| T |
68066 |
ttcagtcctcttgaacaccgcttctccaagaaatggagaaagaaagataatcaaagaataaataaacagaagaaactgagccatatttttcatcctttga |
68165 |
T |
|
| Q |
229 |
atgtactaaaaggatttattttgatcattttatagttaa |
267 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
68166 |
atgtagtaaagatatttattttgatccttttatagttaa |
68204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 68228 - 68316
Alignment:
| Q |
311 |
ttagaagtaacaaaaagcaatttaacaaagaataattaattttaaatgtctcc------acatgttgtgtgtgacccttcatctcactc |
393 |
Q |
| |
|
|||||| || ||||||||||||||| ||||| |||||||||| |||||| ||| | |||||| ||||||||||||| ||||||| |
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|
| T |
68228 |
ttagaaatagcaaaaagcaatttaaaaaagagtaattaatttaaaatgtgtccgatcaaatatgttgcgtgtgacccttcaactcactc |
68316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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