View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11793_high_19 (Length: 399)
Name: NF11793_high_19
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_19 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 386
Target Start/End: Original strand, 5638374 - 5638723
Alignment:
| Q |
36 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638374 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5638473 |
T |
|
| Q |
136 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctgccacnnnnnnncacaataagt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
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|
| T |
5638474 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatgcccttgtcagttcctgccac-aaaaaacacaataagt |
5638572 |
T |
|
| Q |
236 |
atatgtgtttctgtcgttttcatataaattaaaacatggtaacttttatttcaagttttgatcacaacatggtaactgtagagttatcaaatagggtcca |
335 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638573 |
atatgtgtttctgtcgttttcatataaattaaaacatggtaacttttatttcaagttttgatcacaacatggtaactgtagagttatcaaatagggtcca |
5638672 |
T |
|
| Q |
336 |
ctagtattacactttcatataatcaggtagaagaagcactgagaaaaaact |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638673 |
ctagtattacactttcatataatcaggtagaagaagcactgagaaaaaact |
5638723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 34 - 386
Target Start/End: Complemental strand, 5602249 - 5601897
Alignment:
| Q |
34 |
ttgtttgt-ttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcag |
132 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5602249 |
ttgtttgtnttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcag |
5602150 |
T |
|
| Q |
133 |
ctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctgccacnnnnnnncacaata |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |
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|
| T |
5602149 |
ctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatgcccttgtcagttcctgccacaaaaaa-cacaata |
5602051 |
T |
|
| Q |
233 |
agtatatgtgtttctgtcgttttcatataaattaaaacatggtaacttttatttcaagttttgatcacaacatggtaactgtagagttatcaaatagggt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5602050 |
agtatatgtgtttctgtcgttttcatataaattaaaacatggtaacttttatttcaagttttgatcacaacatggtaactgtagagttatcaaatagggt |
5601951 |
T |
|
| Q |
333 |
ccactagtattacactttcatataatcaggtagaagaagcactgagaaaaaact |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5601950 |
ccactagtattacactttcatataatcaggtagaagaagcactgagaaaaaact |
5601897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 5603100 - 5602916
Alignment:
| Q |
30 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5603100 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
5603001 |
T |
|
| Q |
130 |
cagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
5603000 |
cagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctg |
5602916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 5632270 - 5632454
Alignment:
| Q |
30 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5632270 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
5632369 |
T |
|
| Q |
130 |
cagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
5632370 |
cagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctg |
5632454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 5638110 - 5638291
Alignment:
| Q |
36 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638110 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5638209 |
T |
|
| Q |
136 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctgcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
5638210 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctgcca |
5638291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 5602832 - 5602654
Alignment:
| Q |
36 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5602832 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5602733 |
T |
|
| Q |
136 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
5602732 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctg |
5602654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 5651308 - 5651489
Alignment:
| Q |
36 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
135 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5651308 |
gtttgtttgattctttatggcttcatcccttttgtgttcacatctttctaaacttaaactgcaatggattgagaaagaacccgtttacgatattcagcta |
5651407 |
T |
|
| Q |
136 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctgcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
5651408 |
gagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctgcca |
5651489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 5602570 - 5602500
Alignment:
| Q |
36 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattg |
106 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5602570 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattg |
5602500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 5602395 - 5602329
Alignment:
| Q |
150 |
aaattatctctatacattggataatgcaacatgcaagttttcaactatagccctgtcagttcctgcca |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
5602395 |
aaattatctctatacattg-ataatgcaacatgcaagttttcaaggatgcgcctgtcagttcctgcca |
5602329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 5656652 - 5656715
Alignment:
| Q |
121 |
tacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca |
184 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
5656652 |
tacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgca |
5656715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 5718265 - 5718330
Alignment:
| Q |
119 |
tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca |
184 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||| |||||| ||||||| |||||| |
|
|
| T |
5718265 |
tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca |
5718330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 5686118 - 5686183
Alignment:
| Q |
119 |
tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca |
184 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||| |||| | ||||||| |||||| |
|
|
| T |
5686118 |
tttacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgca |
5686183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 5651566 - 5651602
Alignment:
| Q |
338 |
agtattacactttcatataatcaggtagaagaagcac |
374 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5651566 |
agtattacactttcatatattcaggtaaaagaagcac |
5651602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 88564 - 88644
Alignment:
| Q |
112 |
gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca |
192 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| ||| ||||||| ||| |||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
88564 |
gaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttca |
88644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 13055327 - 13055258
Alignment:
| Q |
121 |
tacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagtttt |
190 |
Q |
| |
|
||||||| ||||||| |||| ||| ||| ||| ||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
13055327 |
tacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaacatacaattttt |
13055258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 12134927 - 12135000
Alignment:
| Q |
119 |
tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca |
192 |
Q |
| |
|
||||||||| ||| | |||||| | | ||||||| ||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
12134927 |
tttacgatactcaacaagagcccatagtggaaaaatatttctatacattggataatgcaacatacaatttttca |
12135000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 106913 - 106833
Alignment:
| Q |
112 |
gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca |
192 |
Q |
| |
|
|||||||| ||||||| || ||||||||| ||| || || |||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
106913 |
gaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttca |
106833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 167040 - 166960
Alignment:
| Q |
112 |
gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca |
192 |
Q |
| |
|
||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
167040 |
gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca |
166960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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