View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_20 (Length: 392)
Name: NF11793_high_20
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 111 - 385
Target Start/End: Original strand, 34027539 - 34027813
Alignment:
| Q |
111 |
aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctcta |
210 |
Q |
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| T |
34027539 |
aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctcta |
34027638 |
T |
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| Q |
211 |
tcttcattccttcaatcccacactactctctccaaagaccacgttgctctcatcctcatcccttcttccatacacgtcccagtactctatttctccctcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34027639 |
tcttcattccttcaatcccacactactctctccaaaggccacgttgctctcatcctcatcccttcttccatacacgtccccgtactctatttctccctcc |
34027738 |
T |
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| Q |
311 |
tctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctca |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34027739 |
tctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctca |
34027813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 115 - 385
Target Start/End: Original strand, 34017743 - 34018013
Alignment:
| Q |
115 |
accactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctctatctt |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||||||| || |||| |
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| T |
34017743 |
accactgccgtgtccaacaacaccaccgccctcatcgacgccaccaccgaccaccatctcacttacccaaccttcctccgccaaatcaaatccctctctt |
34017842 |
T |
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| Q |
215 |
cattccttcaatcccacactactctctccaaagaccacgttgctctcatcctcatcccttcttccatacacgtcccagtactctatttctccctcctctc |
314 |
Q |
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||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
34017843 |
cattcctccaatcacacactactctatccaaaggccacgtcgctctcatcctcatcccttcttccatacatgtccccgtactctatttctccctcctctc |
34017942 |
T |
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| Q |
315 |
cctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctca |
385 |
Q |
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|||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||||||||||| |
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| T |
34017943 |
cctcggcgtcaccatcgctcctgccaatccactctcttcaccttcagagttatctcatctcgttcatctca |
34018013 |
T |
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