View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_22 (Length: 389)
Name: NF11793_high_22
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 8956586 - 8956400
Alignment:
| Q |
1 |
gaatgtaatgcaagagaacactatgcattgagaaatatggttagtcatgatagaaaggttttttgtatctgaagtaaggatatagagaatcaatgtgttt |
100 |
Q |
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| T |
8956586 |
gaatgtaatgcaagagaacactatgcattgagaaatatggttagtcatgatagaaaggttttttgtatctgaagtaaggatatagagaagcaatgtgttt |
8956487 |
T |
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| Q |
101 |
taaatagggaaatgaaaattaacctggccgaactccggattaatagaagtttaggaaataattttttaagaaccggagggttaacag |
187 |
Q |
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| T |
8956486 |
taaatagggaaacgaaaattaacctggccgaactctagattaatagaaatttaggacatgattttttaagaatcggagggttaacag |
8956400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 8956368 - 8956260
Alignment:
| Q |
227 |
agaggcgtataacatggcacggttgttagatattatttgcttaagnnnnnnnnn--gtcaaactatagtttcactattttcatcaatttaatgattgaat |
324 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
8956368 |
agaggcgtataacatggcacggttgttggatattatttgctaaagtttttttttttgtcaaactatagtttcactattttcatcaatctaataattgaat |
8956269 |
T |
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| Q |
325 |
tatttcaat |
333 |
Q |
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| T |
8956268 |
tatttcaat |
8956260 |
T |
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