View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_23 (Length: 386)
Name: NF11793_high_23
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 2424411 - 2424122
Alignment:
| Q |
1 |
aaaagaagtatagaaaaagagaagttgacaatgatgccatcacaagtgacatgttagtagaaatattagaagaatccattagaacaatttggcgtttcat |
100 |
Q |
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| T |
2424411 |
aaaagaagtatagaaaaagagaagttgacaatgatgccatcacaagtgacatgttagtagaaatattagaagaatccattagaacaatttggcgtttcat |
2424312 |
T |
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| Q |
101 |
aagaggtgataaagatgcatcaaatttgacaattaaatgtcttaaagaacaacatgtggagctacaagaccctgctgattcacaacttctagtggagatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424311 |
aagaggtgatgaagatgcatcaaatttgacaattaaatgtcttaaagaacaacatgtggagctacaagaccctgctgattcacaacttctagtggagatt |
2424212 |
T |
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| Q |
201 |
ctaacggatcttcaaaaggtaattctagcttcaaatgatacttattttctaaccttaaaaatgttttaattattctctcaatataagtaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424211 |
ctaacggatcttcaaaaggtaattctagcttcaaatgatacttattttctaaccttaaaaatgttttaattattctctcaatataagtaa |
2424122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 2424067 - 2424039
Alignment:
| Q |
345 |
aaaatgtataaactttagttcttgtgcct |
373 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2424067 |
aaaatgtataaactttagttcttgtgcct |
2424039 |
T |
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