View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11793_high_25 (Length: 374)
Name: NF11793_high_25
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 9699989 - 9699648
Alignment:
| Q |
14 |
caccaacataagtgattctgccatcttttggcagggaaatacattaaaatctcataaacacaacaactaaagcatccaacaacttcataggaatgccata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9699989 |
caccaacataagtgattctgccatcttttggcagggaaatacattaaaatctcataaacacaacaactaaagcatccaacaacttcataggaatgccata |
9699890 |
T |
|
| Q |
114 |
caaagataaaattcttaaatattcactactatactatgttacattacatggcatagaaaataaatttaatccaataagctactaaaatacaaagatagta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9699889 |
caaagataaaattcttaaatattcactactatactatgttacattacatggcatagaaaataaatttaatccaataagctactaaaatataaagatagta |
9699790 |
T |
|
| Q |
214 |
caaatgataataactggtctacataacagaacaagcatttggattctcatcactgaaaatctcaggtgcataagcatagtcaacatagtcttttgatggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9699789 |
caaatgataataactggtctacataacagaacaagcatttggattctcatcactgaaaatctcaggtgcataagcatagtcaacatagtcttttgatggc |
9699690 |
T |
|
| Q |
314 |
caatattcactacgtttgatttcagttttattatcatcttct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9699689 |
caatattcactacgtttgatttcagttttattatcatcttct |
9699648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 33236027 - 33235990
Alignment:
| Q |
233 |
tacataacagaacaagcatttggattctcatcactgaa |
270 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
33236027 |
tacataatagaacaagcatttggattttcatcactgaa |
33235990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 40577000 - 40577032
Alignment:
| Q |
241 |
agaacaagcatttggattctcatcactgaaaat |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
40577000 |
agaacaagcatttggattttcatcactgaaaat |
40577032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University