View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_28 (Length: 324)
Name: NF11793_high_28
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 8353244 - 8353397
Alignment:
| Q |
40 |
gggatgatgttt-atggattaatagatacattattttagagttgtttctagcatattcataaaatactttaa-ttttcttgtttaagattgttgaattaa |
137 |
Q |
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| T |
8353244 |
gggatgatgttttatggattaacagacacgttattttagagttgtttcttgcatattcataaaatacttcaattttttttgtttaagattgttgaattaa |
8353343 |
T |
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| Q |
138 |
tatgagtgttnnnnnnntgatagaagtttgaagctatttctaatagctttatat |
191 |
Q |
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| T |
8353344 |
tatgagtgttaacaaaatgatagaagtttgaagctatttctaatagctttatat |
8353397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 26173400 - 26173569
Alignment:
| Q |
21 |
ttaatgatattttagattcgggatgatgtttatggattaatagatacattattttagagttgtttctagcatattcataaaatactttaattttcttgtt |
120 |
Q |
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| T |
26173400 |
ttaataatattttaagttcggaatgatgtttatagattaatagataaattattttagagttgttttttgcatattcataaaatacttaatattttttgtt |
26173499 |
T |
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| Q |
121 |
taagattgttgaattaatatgagtgttnnnnnnntgatagaagtttgaagctatttctaatagctttatat |
191 |
Q |
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| T |
26173500 |
taagattgttgaattaatatgaatgttaaaaaagt-atagaagtttgaagctattttttatagttttatat |
26173569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 25221064 - 25220985
Alignment:
| Q |
17 |
atatttaatgatattttagattcgggatgatgtttatggattaatagatacattattttagagttgtttctagcatattc |
96 |
Q |
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| T |
25221064 |
atatttaatgatattttagatttggggtgatgtttatggattaatagatacattattttagagttgtttcttgcatattc |
25220985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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