View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_32 (Length: 294)
Name: NF11793_high_32
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 25893102 - 25892833
Alignment:
| Q |
11 |
agatggacatcatgatcttatgaaaataaacttttcaggtatgaggacttgaagcctcctgcatcaccatcaccttccttcagacaatcctaggaactgc |
110 |
Q |
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|||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25893102 |
agattgacattatgatcttatgaaaatgaacttttcaggtatgaggacttgaagcctcctgcatcaccatcaccttccttcagacaatcctaggaactgc |
25893003 |
T |
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| Q |
111 |
ctcctgcctatggaatcagataaggttagagatgcaaatcatt--atatgtaaagtgtactcttgattatgtacactacataccctggactcataattgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25893002 |
ctcctgcctatggaatcagataaggttagagatgcaaatcattacatatgtaaagtgtactcttgattatgtacactacataccctggactcataattgt |
25892903 |
T |
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| Q |
209 |
gatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaatatgaagatggaag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892902 |
gatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaatatgaagatggaag |
25892833 |
T |
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