View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_34 (Length: 287)
Name: NF11793_high_34
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 10251448 - 10251715
Alignment:
| Q |
18 |
tgttccgatgtcgaacatgtgttagtgtcaatgcccgaatttggaaactaaaattccaaacctgaaatgtaaacgttctaatcttgatctaaccaacaac |
117 |
Q |
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| T |
10251448 |
tgttccaatgtcaaacatgtgtcagtgtcaatgtccgaatttggaaactaaaattccaaacctgatatctaaacgttctaatcttgatctaaccaacaac |
10251547 |
T |
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| Q |
118 |
caaagatattaatgcaatcatccgaattcctcttaggttatatatgccaactagtcgatg------tgtttctaatattctggcaggttgatttggttag |
211 |
Q |
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| T |
10251548 |
cgaagatattaatgaaatcatccgaattcctcttaggttatatatgccaactagtcgatgctcccatgtttctaatattctggcaggttgatttggttag |
10251647 |
T |
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| Q |
212 |
caacataggtttggttggtcatgtttcgtttggcgatgttctattgcctctaatttattcctatgcta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10251648 |
caacataggtttggttggtcatgtttcgtttggcgatgttctattgcctctaatttattcctatgcta |
10251715 |
T |
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