View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_high_4 (Length: 681)
Name: NF11793_high_4
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 106 - 671
Target Start/End: Original strand, 24202953 - 24203512
Alignment:
| Q |
106 |
caattttgttgtaataaatcatgcctgttgtatatagaaaacaatgtggttagtaaatgataaaatgtggtactt--agaatttgggttcggcgtaaatc |
203 |
Q |
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|||||| ||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| |||| |||||| |
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| T |
24202953 |
caatttggttgtaataaatcatgcctactgtatatataaaacaatatgattagtaaatgataaaatgtggtacttttagaatttgggtacggcataaatc |
24203052 |
T |
|
| Q |
204 |
aaccattacgtacccgcaatagcttcttcgggttgataatattttcttacatggactctcatgcgttcgtattgtcttgtttgatccctgcaatgtccac |
303 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
24203053 |
aacccttacgaacccgcaatagcttcttcgggttgataatattttcttacatggactctcatgtgttcgtattgtcctgtttgatccctgcaatgtgcac |
24203152 |
T |
|
| Q |
304 |
catgattagcttgctcgcttcaagaggtcgtcacaaagtacagtcccaactcttgcgatctttttgccgggccacattttctccatcctgtaagatctca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
24203153 |
catgattagcttgctcgcttcaagaggtcgtcacaaagtacagtcccaactcttgcgatctttttgtcgggcctcattttctccatcctgtaagatctca |
24203252 |
T |
|
| Q |
404 |
tgagatccatgtgagggatattatcaacttgaagaagttatttgagtatgcagtcatcaccttgcaagccagtttgtaaggtttgagttagacccaacct |
503 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24203253 |
tgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaagccagtttgtaagggctgagttagacccaacct |
24203352 |
T |
|
| Q |
504 |
aaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactttgtccttgaagtattcttcaagagtttata |
603 |
Q |
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| T |
24203353 |
aaattctaagtattcc-------actggaatatcttttgttgacttaaaccagtttgaatttaatgac-ttgtccttgaagtattctgcaagagtttata |
24203444 |
T |
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| Q |
604 |
ggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
671 |
Q |
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| T |
24203445 |
ggttggttcttgtccttgaatttataccatacatactttttaagcattaaggtttattggttcctttg |
24203512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 24202592 - 24202667
Alignment:
| Q |
17 |
agaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
92 |
Q |
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| T |
24202592 |
agaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcac |
24202667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 476 - 657
Target Start/End: Complemental strand, 29409987 - 29409796
Alignment:
| Q |
476 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
573 |
Q |
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||||||||| ||||||||| |||| ||||||||||| | |||| | ||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
|
| Q |
574 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtt |
657 |
Q |
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|| | ||| | ||| || |||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||| |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggtt |
29409796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 29411004 - 29410931
Alignment:
| Q |
17 |
agaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctc |
90 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
29411004 |
agaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctc |
29410931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 614 - 671
Target Start/End: Complemental strand, 27560418 - 27560361
Alignment:
| Q |
614 |
tgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
671 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttg |
27560361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 27561578 - 27561526
Alignment:
| Q |
40 |
aaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
92 |
Q |
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| T |
27561578 |
aaattgagtgggaaggttattcacacaaacttccctttcattttctttctcac |
27561526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 36668471 - 36668397
Alignment:
| Q |
18 |
gaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
92 |
Q |
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|||||||||||| |||||| ||||||||||| ||||||||||||||||| | || |||||||||||||||||| |
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| T |
36668471 |
gaaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcac |
36668397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
515 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
573 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 27560841 - 27560771
Alignment:
| Q |
349 |
ccaactcttgcgatctttttgccgggccacattttctccatcctgtaagatctcatgagatccatgtgagg |
419 |
Q |
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||||||||| | |||||||| ||||||| | ||||| ||||| |||||| ||||||| ||||||||||||| |
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| T |
27560841 |
ccaactcttacaatctttttcccgggcctcgttttcgccatcttgtaaggtctcatgcgatccatgtgagg |
27560771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
515 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
573 |
Q |
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||||||||||||||||||||| ||| | || ||||||| |||||||||||||||||| |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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