View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11793_high_8 (Length: 566)
Name: NF11793_high_8
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 43771053 - 43771596
Alignment:
| Q |
16 |
cagatccctcaactacgccctcctcaaccgatactggtccttcacctccgattcccgtatcggcagcgacgtcgatagtgaaattcgatccaaaaccaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43771053 |
cagatccctcaactacgccctcctcaaccgatactggtccttcacctccgattcccgtatcggcagcgacgtcgatagtgaaattcgatccaaaagcaaa |
43771152 |
T |
|
| Q |
116 |
gccttagaatttactgaatttccaccatacccagagaacccaattatcaaacagtacagtgcggagtattggatcatgggggatcttgttacacccacga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43771153 |
gccttagaatttactgaatttccaccatacccagagaacccaattatcaaacagtacagtgcggagtattggatcatgggggatcttgttacaccctcga |
43771252 |
T |
|
| Q |
216 |
aattgcgaactgggtcgtttgcaaaacgggtttttgatgaacgtgaggctgatgtgatttttgttccgttttttgctactattagtgctgaattgcaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43771253 |
aattgcgaactgggtcgtttgcaaaacgggtttttgatgaacgtgaggctgatgtggtttttgttccgttttttgctactattagtgctgaattgcaatt |
43771352 |
T |
|
| Q |
316 |
gggtatggcgaaaggggttttcaggaagaaagttgggaatgaggattatcagaggcagagtgaggttgttgattttgtgaagaaaacggaagcttggaat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43771353 |
gggtatggcgaaaggggttttcaggaagaaagttgggaatgaggattatcagaggcagagtgaggttgttgattttgtgaagaaaactgaagcttggaat |
43771452 |
T |
|
| Q |
416 |
cgttctggtggaagagatcatgtgtttgttgtcactggtatgttttgttttatgtgcttgcaatttgcaaacttgttttgttactgttatggttttcaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43771453 |
cgttctggtggaagagatcatgtgtttgttgtcactggtatgttttgttttatgtgcttgcaatttgcaaacttgttttgttactgttatggttttcaat |
43771552 |
T |
|
| Q |
516 |
ttttggccatgcttggataaatagattaaattcagcctttgctt |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43771553 |
ttttggccatgcttggataaatagattaaattcagcctttgctt |
43771596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University