View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_10 (Length: 537)
Name: NF11793_low_10
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 63 - 518
Target Start/End: Original strand, 42744075 - 42744528
Alignment:
| Q |
63 |
ttgtgattaaagaattgatttagtcatgactcgtgatattaatactataatgaaatttgttaactacttgacttcaatcattttgttgaaaatgcaataa |
162 |
Q |
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| T |
42744075 |
ttgtgattagagaattgatttagtcatgactcgtgatattaatactataatgaaatttgttaactacttaatttcaatcatttcgttgaaaatgcaataa |
42744174 |
T |
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| Q |
163 |
tttagannnnnnnctaaatatttttctcttgtcttaaaaatattatttgatgcaaaaatcaactagaaagcaatctaaacttccannnnnnncattatta |
262 |
Q |
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| T |
42744175 |
tttagatttttttccaaatattttt-tcttgtcttaaaaatgttatttgatgcaaaaatcaactagaaagcaatctaaacttccatttttttcattatta |
42744273 |
T |
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| Q |
263 |
actaatcactttcaaatcaaactnnnnnnnnnt---gaattttacaaccggtaaaatcaatcatcttccatttgaacagtcagtccctatataacactca |
359 |
Q |
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| T |
42744274 |
a----tcactttcaaatcaaactaaaaaaaaaaaaagaattttacaaccgataaaatcaatcatcttccatttgaacagtcagtcccaatataacactca |
42744369 |
T |
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| Q |
360 |
tctcacattctctctccatatctttataaccataggcatgttatttttctctacctctccatatatttctttgtaatttaacaattgagctggcgggcaa |
459 |
Q |
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| T |
42744370 |
tctcacattctctctccatatctttataaccataggcatgttatttttctctacctctccatatatttctttgtaatttaacaattgagctggcgggcaa |
42744469 |
T |
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| Q |
460 |
acccgaataatgaatccatccttatcttattctactttagtaataacacacataaggta |
518 |
Q |
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| T |
42744470 |
acccgaataatgaatccatccttatcttattctacttttgtaataacacacataaggta |
42744528 |
T |
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