View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11793_low_12 (Length: 485)

Name: NF11793_low_12
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11793_low_12
NF11793_low_12
[»] chr8 (12 HSPs)
chr8 (18-475)||(548712-549169)
chr8 (18-275)||(23423459-23423716)
chr8 (299-475)||(23423716-23423892)
chr8 (299-475)||(894464-894640)
chr8 (299-443)||(906003-906147)
chr8 (357-443)||(1963481-1963567)
chr8 (130-230)||(894679-894779)
chr8 (130-230)||(905864-905964)
chr8 (370-420)||(566327-566377)
chr8 (363-443)||(2014862-2014942)
chr8 (363-443)||(2018245-2018325)
chr8 (363-443)||(2436899-2436979)
[»] scaffold0428 (2 HSPs)
scaffold0428 (366-443)||(1348-1425)
scaffold0428 (126-262)||(1138-1274)
[»] chr6 (6 HSPs)
chr6 (362-443)||(845020-845101)
chr6 (362-443)||(870304-870385)
chr6 (366-443)||(33257230-33257307)
chr6 (300-443)||(8294448-8294591)
chr6 (126-262)||(33257020-33257156)
chr6 (126-262)||(8294599-8294735)
[»] scaffold0184 (2 HSPs)
scaffold0184 (366-442)||(15200-15276)
scaffold0184 (113-199)||(11865-11951)
[»] scaffold0078 (2 HSPs)
scaffold0078 (366-442)||(57568-57644)
scaffold0078 (113-199)||(60893-60979)
[»] chr7 (1 HSPs)
chr7 (403-443)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (363-443)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 549169 - 548712
Alignment:
Q  18 gtgtttaccctgtgggacccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  549169 gtgtttaccctgtgggacccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgt 549070  T
Q  118 tttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  549069 tttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggtt 548970  T
Q  218 attagagttccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattctactcttgatgatgatccattaaattatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  548969 attagaattccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatt 548870  T
Q  318 taccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548869 taccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttt 548770  T
Q  418 tttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548769 tttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 548712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 23423459 - 23423716
Alignment:
Q  18 gtgtttaccctgtgggacccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423459 gtgtttaccctgtgggacccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgt 23423558  T
Q  118 tttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423559 tttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggtt 23423658  T
Q  218 attagagttccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagg 275  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23423659 attagagttccaaataagcactcaaattctgcttattttagtggatcttcaaaaaagg 23423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 299 - 475
Target Start/End: Original strand, 23423716 - 23423892
Alignment:
Q  299 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  399 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 23423892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 299 - 475
Target Start/End: Complemental strand, 894640 - 894464
Alignment:
Q  299 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 398  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  399 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 475  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg 894464  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 443
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  299 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 398  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  399 atagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  357 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 894779 - 894679
Alignment:
Q  130 ttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttcca 229  Q
    |||||||||||||||| || |  ||||||||||| |||||||| |||| |||||  ||||||  ||||||   || || ||||||||| |||||||||||    
T  894779 ttttgggagtggtggaacagtttctcatgaacaactcaatgagttagcatttggactagaattgagtggtaagaaattcttgtgggttgttagagttcca 894680  T
Q  230 a 230  Q
    |    
T  894679 a 894679  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 905864 - 905964
Alignment:
Q  130 ttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttcca 229  Q
    |||||||||||||||| || |  ||||||||||| | |||||| |||| ||||| |||||||  ||||||   || || ||||||||| |||||||||||    
T  905864 ttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaaagttcttgtgggttgttagagttcca 905963  T
Q  230 a 230  Q
    |    
T  905964 a 905964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  370 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 420  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  363 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  363 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  363 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  366 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 1138 - 1274
Alignment:
Q  126 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 225  Q
    |||| ||||| ||||||||| ||||| |||| || ||| |||||||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  1138 tctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagc 1237  T
Q  226 tccaaataagcactcaagttctgcttattttagtgga 262  Q
    ||||| ||| || || |||||||||||||||| ||||    
T  1238 tccaagtaaacattctagttctgcttattttaatgga 1274  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  362 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  362 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  366 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  300 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 399  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  400 tagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 33257020 - 33257156
Alignment:
Q  126 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 225  Q
    |||| ||||| ||||||||| ||||| |||| || ||| |||||||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  33257020 tctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagc 33257119  T
Q  226 tccaaataagcactcaagttctgcttattttagtgga 262  Q
    ||||| ||| || || |||||||||||||||| ||||    
T  33257120 tccaagtaaacattctagttctgcttattttaatgga 33257156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 8294735 - 8294599
Alignment:
Q  126 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 225  Q
    |||||||||| ||||||||| ||||| |||| || ||| |||| ||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  8294735 tctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggttgtgagagc 8294636  T
Q  226 tccaaataagcactcaagttctgcttattttagtgga 262  Q
    ||||| |||  | || |||||||| ||||||||||||    
T  8294635 tccaagtaaaaattctagttctgcctattttagtgga 8294599  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  366 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 442  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0184; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 11951 - 11865
Alignment:
Q  113 tctgttttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggt 199  Q
    |||||||||||  | || ||||| ||||||||| ||||  |||| |||||| | |||||| ||||||||||||| |||| |||||||    
T  11951 tctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt 11865  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  366 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 442  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 60893 - 60979
Alignment:
Q  113 tctgttttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggt 199  Q
    |||||||||||  | || ||||| ||||||||| ||||  |||| |||||| | |||||| ||||||||||||| |||| |||||||    
T  60893 tctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt 60979  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  403 ttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  363 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 443  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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