View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_15 (Length: 426)
Name: NF11793_low_15
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 7767049 - 7766654
Alignment:
| Q |
16 |
atgaagaagcaccatatagaagcacttgnnnnnnnntgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggtgacatggtgagtc |
115 |
Q |
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| T |
7767049 |
atgaagaagcaccgtatagaagcacttgaaaaaaaatgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggcgacatggtgagtc |
7766950 |
T |
|
| Q |
116 |
ctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766949 |
ctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcg |
7766850 |
T |
|
| Q |
216 |
tagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaatttaacattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766849 |
tagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaatttaacattat |
7766750 |
T |
|
| Q |
316 |
cactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtcccaac |
411 |
Q |
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| T |
7766749 |
cactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtcccaac |
7766654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 52 - 258
Target Start/End: Original strand, 45392506 - 45392712
Alignment:
| Q |
52 |
tgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggtgacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgaca |
151 |
Q |
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| T |
45392506 |
tgtatattaagaagattatacccgacttaaatctcgatcaatgtcggtggcgacatggtgactcctagtaatttgctcaccctggtgatgaagggtgacc |
45392605 |
T |
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| Q |
152 |
aatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcgtagtctcctcagccttgtgaacagcataatcttcca |
251 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||| ||||||||||| |||| |
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| T |
45392606 |
aatgtcttggcagcatcctctcttatgttctctgctatcttcaaacaattgtgtaccgatttggtagtctcctcagccttgtaaacagcataattctcca |
45392705 |
T |
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| Q |
252 |
actcctg |
258 |
Q |
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||||||| |
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| T |
45392706 |
actcctg |
45392712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 7216621 - 7216769
Alignment:
| Q |
109 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
208 |
Q |
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|||| |||||||||| ||||| ||||| ||||| || |||| || ||||||||||||| |||| || | |||||||||||| |||||| | ||| |
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| T |
7216621 |
gtgactcctagtaatctgctcgccctgatgatgcagcatgaccaaagtcttggtagcatcttctcgcatttcctctgctatcttccgacaattgtttacc |
7216720 |
T |
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| Q |
209 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcct |
257 |
Q |
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||||| || ||||| ||||| |||| ||||||||| || ||||| |||| |
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| T |
7216721 |
gattttgtcgtctcttcagctttgtaaacagcatactcctccaaatcct |
7216769 |
T |
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