View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_16 (Length: 416)
Name: NF11793_low_16
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 39385639 - 39385269
Alignment:
| Q |
17 |
aagtcttacaagatttgacgataaagcaatgtctaaagatattatacgtatnnnnnnntacgatagtataaatgtctttcagtatattggttaaatctgt |
116 |
Q |
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| T |
39385639 |
aagtcttacaagatgtgacgataaagcaatgtctaaagatattatacgtataaaaaaatacgatagtataaatgtctttcagtatattggttaaatctgt |
39385540 |
T |
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| Q |
117 |
tttttattgtcacaacagagtcgtgtttttctccatgcatatatatcatttttctatacagttggctaattattactcaacaaggtattgtatatagtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385539 |
tttttattgtcacaacagagtcgtgtttttctccatgcatatatatcatttttctatacagttggctaattattactcaacaaggtattgtatatagtgt |
39385440 |
T |
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| Q |
217 |
gtgcgccagcgtgtgtgaggcatcgctaatatttgaggctacttggttaagagacctaatgctgtcccattctcaaattatgaatcacgatgctccaatt |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385439 |
gtgcgc--------------catcgctaatatttgaggctacttggttaagagacctaatgctgtcccattctcaaattatgaatcacgatgctccaatt |
39385354 |
T |
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| Q |
317 |
gtccagattatcagacgcagtatcatgaaagcagaaagatcattaccgaactcagtgccgctgagatcatcgatcgtatcttcat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39385353 |
gtccagattatcagacgcagtatcatgaaagcagaaagatcattaccgaactcagtgccgccgagatcatcgatcgtatcttcat |
39385269 |
T |
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