View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_17 (Length: 415)
Name: NF11793_low_17
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 13266666 - 13266273
Alignment:
| Q |
14 |
caggaggaaccgtcgttttcttagtagcta----ggtctccggccggcacatttcccaccctaacatataacatgttcccgtaactttttatcatttgaa |
109 |
Q |
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| T |
13266666 |
caggaggaaccgtcgttttcttagtagctatatgggtctccggccggcacatttcccaccctaacatataacatgttcccataactttttatcatttgaa |
13266567 |
T |
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| Q |
110 |
ctacacagttgtagttattctcctagactatatataagtctaatattatatatgctccttgatgtaatttaattctcccattatcaatataatttaattc |
209 |
Q |
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| T |
13266566 |
ctacacagttgtagttattctcctagactatatataagtctaatattatatatgctg--tgatgtaatttaattctcctattatcaatataatttaattc |
13266469 |
T |
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| Q |
210 |
cattttatatttacatttaatagtatccactcttaatatatttttgatctcaaaacttagaggagtaaaattcctacttttgtatatgacattgaaaaga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13266468 |
cattttatatttacatttaatagtatccactcttaatatatttttgatctcaaaatttagaggagtaaaattcctacttttgtatatgacattgaaaaga |
13266369 |
T |
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| Q |
310 |
tacaaaaggaaatatacgaggggttaaaagcaactgttgtactgctactactactagtattattgttgtnnnnnnntacatgctttccatgttcat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13266368 |
tacaaaaggaaatatacgaggggttaaaagcaactggtgtactgctactactactagtattattgttgtaaaaaaatacatgctttccatgttcat |
13266273 |
T |
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