View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_2 (Length: 887)
Name: NF11793_low_2
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 17 - 765
Target Start/End: Complemental strand, 48770244 - 48769484
Alignment:
| Q |
17 |
atgaaatgcattaagcatttttatcgtgaaattttttcgtatcattctgnnnnnnnnatttaattattacaaaactatcacattgtgttacgtctctttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
48770244 |
atgaaatgcattaagcatttttatcgtgaaattttttcgtatcattctgttttttttatttaattattacaaaactatcacattgttttaagtctctttt |
48770145 |
T |
|
| Q |
117 |
caattttcaagta------------agttgggattatttgaaaatgactttttatcaaactagaattgcttaaacttgttcccaaaacaactttctcttg |
204 |
Q |
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| T |
48770144 |
caattttcaagtagttgtacacaaaagttgggattatttgaaaatgactttttatcaaaccagaattgcttaaatttgttcccaaaacaactttctcctg |
48770045 |
T |
|
| Q |
205 |
aatatataattaatatcaattactaaactttatgcatcaattttctccttagattataggttatttgtctgaaaaattgaacacgttaacggttaaccaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
48770044 |
aatatataattaatatcaattactaaactttatgcatcaattttctccttagattataggttgtttgtctgaaaaattgaatacgttaacggttaaccaa |
48769945 |
T |
|
| Q |
305 |
tatgtgttataggttgagggatgtgtcgtttgtttaaattttatacataagttgtgagttttatacttttagacatcattgcttggattcattcattgat |
404 |
Q |
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| T |
48769944 |
tatgtgttataggttgagggatgtgtcgtttgtttaaattttatacataagttgtgagttttatacttttagacatcattgcttggattcattcattgat |
48769845 |
T |
|
| Q |
405 |
ttgggagaaaagggggaaaaagaaattatgaactgtatgacattactgtgacacaatttgttatgatttgtacatgtagtcacaatggaaagtttagcta |
504 |
Q |
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| T |
48769844 |
ttgggagaaaagggggaaaaagaaattatgaactgtatgacattactgtgacacaatttgttatgatttgtacatgtagtcacaatggaaagtttagcta |
48769745 |
T |
|
| Q |
505 |
tgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttggagtc |
604 |
Q |
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| T |
48769744 |
tgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttggagtc |
48769645 |
T |
|
| Q |
605 |
tttgatggtatagttacatatttctctaannnnnnnctcctggtcgaattttgattggaaagtatgtcgaaaatatttcacaagggaatcatgtcatgga |
704 |
Q |
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| T |
48769644 |
tttgatggtatagttacatatttctctaatttttttctcctggtcgaattttgattggaaagtatgtcgaaaatatttcacaagggaatcatgtcatgga |
48769545 |
T |
|
| Q |
705 |
tattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
765 |
Q |
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| T |
48769544 |
tattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
48769484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 828 - 877
Target Start/End: Complemental strand, 48769488 - 48769439
Alignment:
| Q |
828 |
aatatatagcctgattttgtatttttgtcttccattttttagtgatgtcc |
877 |
Q |
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| T |
48769488 |
aatatatagcctgattttgtacttttgtcttccattttttagtgatgtcc |
48769439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 488 - 630
Target Start/End: Original strand, 3409420 - 3409562
Alignment:
| Q |
488 |
aatggaaagtttagctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcg |
587 |
Q |
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|||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| | | |
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| T |
3409420 |
aatggaaaattcagctatggatatgctagctcccctggcaagagatcttcaatggaagatttttatgagacaagaattgacggcattaatggcgaagttg |
3409519 |
T |
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| Q |
588 |
ttggcctttttggagtctttgatggtatagttacatatttctc |
630 |
Q |
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| T |
3409520 |
ttggcctttttggagtttttgatggtatatttacataattctc |
3409562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 488 - 630
Target Start/End: Complemental strand, 3437403 - 3437261
Alignment:
| Q |
488 |
aatggaaagtttagctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcg |
587 |
Q |
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|||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| | | |
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| T |
3437403 |
aatggaaaattcagctatggatatgctagctcccctggcaagagatcttcaatggaagatttttatgagacaagaattgacggcattaatggcgaagttg |
3437304 |
T |
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| Q |
588 |
ttggcctttttggagtctttgatggtatagttacatatttctc |
630 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
3437303 |
ttggcctttttggagtttttgatggtatatttacataattctc |
3437261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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