View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_24 (Length: 386)
Name: NF11793_low_24
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 177 - 372
Target Start/End: Complemental strand, 41533433 - 41533242
Alignment:
| Q |
177 |
tattttttagagtggtttcataatagaaaatccaaataaaacttttcatattttaattttcacaaaataaaaccaagcaacgtaagttgaaa-ctgaaaa |
275 |
Q |
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| T |
41533433 |
tattttttagagtggtttcataatagaaaatccaaataaaacttttcatatttt-----tcacaaaataaaaccaagcaacgtaagttgaaaactgaaaa |
41533339 |
T |
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| Q |
276 |
cgataactcaattgatagataattttataagtgtgtttattatatatcgatgttcatggttaatcatgatatattaatttttcagatttagtcttga |
372 |
Q |
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| T |
41533338 |
cgataactcaattgatagataattttatcagtgtgtttattatatattgatgttcatggttaatcatgatatattaaattttcagatttagtcttga |
41533242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 41537044 - 41536872
Alignment:
| Q |
14 |
gatgaatgatgttaaccagatagtagattgtgatga---agatgatttgtctgacactgctggttcaggtaacctctattgcaatccttttcttcagttt |
110 |
Q |
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| T |
41537044 |
gatgaatgatgttaaccagatagtagattgtgatgatcaagatgatttgtctgacactgctggttcaggtaacctctattgcaatccttttcttcagttt |
41536945 |
T |
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| Q |
111 |
aatgtcatgaattatttgaatactttttctattattatggttattataattaattcccatgcatcttattttt |
183 |
Q |
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| T |
41536944 |
aatgtcatgaattatttgaataccttttctattattatggttattataattaattcccatgcatcttattttt |
41536872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 41538978 - 41539092
Alignment:
| Q |
180 |
tttttagagtggtttcataatagaaaatccaaataaaacttttcatattttaattttcacaaaataaaaccaagcaacgtaagttg-aaactgaaaacga |
278 |
Q |
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| T |
41538978 |
tttttaaagtgggttcataatagaaaatccaaatgaaacttatgatctttt-----tcacataataaaaccaagcaacgtaagttgaaaactgaaaacga |
41539072 |
T |
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| Q |
279 |
taactcaattgatagataat |
298 |
Q |
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||| |||||||||||||||| |
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| T |
41539073 |
taattcaattgatagataat |
41539092 |
T |
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