View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_26 (Length: 353)
Name: NF11793_low_26
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 3470935 - 3471209
Alignment:
| Q |
1 |
tgttctcctctcctaagctcctcatcatctatgaaaacattgatgcccttttggtgcaaaccatgatagagagagcctgtgaaacttgttcttgtatctt |
100 |
Q |
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| T |
3470935 |
tgttctcctctcctaagctcctcatcatctatgaaaacattgatgcccttttggtgcaaaccatgatagagagagcctgtgaaacttgttcttgtatctt |
3471034 |
T |
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| Q |
101 |
cacctctgaaactaaggaacacatcataattccatccatgtagcattagaagaattttaggctgaatcgcggactaggtcgcagtgtattgtaaacgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3471035 |
cacctctgaaactaaggaacacatcataattccatccatgtagcattagaagaattttaggctgaatcgcggactaggacgcagtgtattgtaaacgcta |
3471134 |
T |
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| Q |
201 |
ctcttgatgaggatattcaaaatatcattttcataaatgaaaacaaagatttgactttaaagaaaggaaaatgga |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3471135 |
ctcttgatgaggatattcaaaatatcattttcataaatgaaaacaaagatttgactttaaagaaaggaaaatgga |
3471209 |
T |
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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 48539970 - 48540025
Alignment:
| Q |
282 |
ataaatggtttagaagagtctctgagcaaagacaggaaacataacaagcaagtttc |
337 |
Q |
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|||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |
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| T |
48539970 |
ataaatggtttagaagagtctctgagaagagacaggaaatataacaagcaagtttc |
48540025 |
T |
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