View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_29 (Length: 322)
Name: NF11793_low_29
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 7440082 - 7439771
Alignment:
| Q |
1 |
atcactaaaatcaaagttgtgaattgtgatacctatggtccaaaacatactgacaaagcaataccttgtcttcttttgaatagatacgaattctcacgcg |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7440082 |
atcactaaaaccaaagttgtgaattgtgatacctatggtccaaaacatactgacaaagcaataacttgtcttcttttgaatagatacgaattctcacgcg |
7439983 |
T |
|
| Q |
101 |
cctagacgcgtgaagttgttgaagtgagagtgtgttgttgtgacagtacattctagtattccatggcaagacatgttacagtttgtgttgctgtgtttgt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7439982 |
cctagacgcgtgaagtagttgaagtgagagtgtgttgttgtgacagtacattctagtattccatggcaaggcatgttacagtttgtgttgctgtgtttgt |
7439883 |
T |
|
| Q |
201 |
ggcagaaatactgttagcagatttataagtatttgctaaaatctctgtgctttgactatgtttctaactcatagacattctttgacaacgttagaataca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7439882 |
ggcagaaatactgttagcagatttataagtatttgctaaaatctctgtgctttgactatgtttccaactcatagacattctttgacaacgttagaataca |
7439783 |
T |
|
| Q |
301 |
aatggttctctg |
312 |
Q |
| |
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|||||||||||| |
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| T |
7439782 |
aatggttctctg |
7439771 |
T |
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