View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11793_low_3 (Length: 864)

Name: NF11793_low_3
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11793_low_3
NF11793_low_3
[»] chr4 (8 HSPs)
chr4 (337-853)||(10111424-10111937)
chr4 (18-344)||(10111072-10111399)
chr4 (705-849)||(40002117-40002261)
chr4 (705-849)||(13698386-13698530)
chr4 (705-849)||(21301908-21302052)
chr4 (705-849)||(54346251-54346395)
chr4 (705-849)||(8982360-8982504)
chr4 (711-849)||(36357195-36357333)
[»] scaffold0011 (1 HSPs)
scaffold0011 (705-852)||(4914-5061)
[»] chr5 (5 HSPs)
chr5 (705-852)||(13584789-13584936)
chr5 (705-849)||(41856467-41856612)
chr5 (705-849)||(24773432-24773576)
chr5 (705-849)||(42022860-42023005)
chr5 (705-849)||(17507950-17508093)
[»] chr8 (4 HSPs)
chr8 (705-852)||(19433322-19433469)
chr8 (705-852)||(19569472-19569619)
chr8 (705-849)||(21646157-21646301)
chr8 (705-849)||(32013574-32013718)
[»] chr6 (3 HSPs)
chr6 (705-851)||(17284919-17285064)
chr6 (705-853)||(10491015-10491163)
chr6 (705-849)||(22700321-22700465)
[»] scaffold0517 (1 HSPs)
scaffold0517 (705-849)||(1439-1583)
[»] scaffold0166 (1 HSPs)
scaffold0166 (705-849)||(15816-15960)
[»] scaffold0165 (1 HSPs)
scaffold0165 (705-849)||(14861-15005)
[»] scaffold0014 (1 HSPs)
scaffold0014 (705-849)||(29421-29565)
[»] chr7 (4 HSPs)
chr7 (705-849)||(33241051-33241195)
chr7 (705-849)||(47996848-47996992)
chr7 (705-755)||(17498785-17498835)
chr7 (705-755)||(17554379-17554429)
[»] chr3 (5 HSPs)
chr3 (705-849)||(3479022-3479166)
chr3 (705-849)||(15765094-15765238)
chr3 (705-849)||(17361953-17362097)
chr3 (705-849)||(17366595-17366739)
chr3 (705-849)||(20092725-20092869)
[»] chr2 (4 HSPs)
chr2 (705-849)||(42725523-42725667)
chr2 (705-849)||(44756675-44756819)
chr2 (708-849)||(40035834-40035975)
chr2 (772-849)||(27568706-27568786)
[»] chr1 (3 HSPs)
chr1 (705-849)||(27714319-27714463)
chr1 (705-849)||(37406491-37406635)
chr1 (705-849)||(5727993-5728137)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 337 - 853
Target Start/End: Original strand, 10111424 - 10111937
Alignment:
Q  337 cacagttatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgctaagctaggttaaaatgaagaatctcaagccaataattt 436  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10111424 cacaattatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgccaagctaggttaaaatgaagaatctcaagccaatcattt 10111523  T
Q  437 gtaaaagattttgtgtttgctttgtgttgaactaataaagcatcggaatttgaggatata-tactcttggtcgttgtttatgatttggttgcaaggtatt 535  Q
    |||||| | |||||||||||||||| |||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10111524 gtaaaaaactttgtgtttgctttgtcttgaactaa---agcatcggaatttgaggatataatactcttggtcgttgtttatgatttggttgcaaggtatt 10111620  T
Q  536 catttattgcttatcattgtgttggtaagttgaaatttcttatgtaacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 635  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111621 catttattgcttatcattgtgttggcaagttgaaatttcttatgtcacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 10111720  T
Q  636 taattaaagacattagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagttttgggtactctgtttagcacata 735  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10111721 taattaaagacagcagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagtttttggtactctgtttagcacata 10111820  T
Q  736 gctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcgattttttctttcg 835  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  10111821 gctaacagtcaatgaaattt-tccccaccaatgaggcgctgcatcagaattaagcatgatagcaactactaatttgataaaggtttgattttttctttcc 10111919  T
Q  836 gctttaccgttcatctca 853  Q
    ||||||||||||||||||    
T  10111920 gctttaccgttcatctca 10111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 10111072 - 10111399
Alignment:
Q  18 catgacatcgatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggnnnnnnnnnnnnnnnnnnnnnncaataaaaaatgcacaatt 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||| |||||||    
T  10111072 catgacatcaatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggtttttttacactttttgtttttcaataaaaaattcacaatt 10111171  T
Q  118 actttgtcaatttt-gtatcggcaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaatctatggtgtg 216  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10111172 actttgtcaatttttgtatcgacaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaatctatggtgta 10111271  T
Q  217 ttgtatggtgtaatgctacctattattacctagtttatgtttatggaatttacttgcaattatatatttttcataggtatgtctctattgttcaaatttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10111272 ttgtatggtgtaatgctacctattattacctagtttatgtttatgtaatttacttgcaattatatatttttcatatatatgtctctattgttcaaatttt 10111371  T
Q  317 tgttgttctattgatcaacacacagtta 344  Q
    ||||||||||||||||||||||||||||    
T  10111372 tgttgttctattgatcaacacacagtta 10111399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 40002117 - 40002261
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  40002117 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 40002216  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  40002217 taattcggtaaaggttctattttttctttccgctttaccgttcat 40002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 13698386 - 13698530
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  13698386 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 13698485  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  13698486 taattcggtaaacgttctattttttctttccgctttaccgttcat 13698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 21302052 - 21301908
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21302052 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21301953  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21301952 taattcggtaaacgttctattttttctttccgctttaccgttcat 21301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 54346251 - 54346395
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  54346251 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 54346350  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  54346351 taattcggtaaacgttctattttttctttccgctttaccgttcat 54346395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 8982504 - 8982360
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  8982504 tctttgttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 8982405  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  8982404 taattcggtaaacgttctattttttctttccgctttaccgttcat 8982360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 711 - 849
Target Start/End: Original strand, 36357195 - 36357333
Alignment:
Q  711 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt 810  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |  |||||||||||  | |||||||||||||     
T  36357195 ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctctggaattaagcattgttgcaactactaattc 36357294  T
Q  811 ggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    |||||| |||| |||||||||||| ||||||||||||||    
T  36357295 ggtaaacgttctattttttctttccgctttaccgttcat 36357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 120; Significance: 6e-61; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 705 - 852
Target Start/End: Original strand, 4914 - 5061
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4914 tcttagtcttgggtactccgtttagcacatagctaacagtcaataaaatttccccccacaaatgaggcgctgcaccagaattaagcatgatagcaactac 5013  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 852  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5014 taattcggtaaaggttcgattttttctttccgctttaccgttcatctc 5061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 6e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 705 - 852
Target Start/End: Complemental strand, 13584936 - 13584789
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13584936 tcttcgttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccagaattaagcatgatagcaactac 13584837  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 852  Q
    || || ||||||||||||||| |||||||| |||||||||||||||||    
T  13584836 tagttcggtaaaggttcgattctttctttccgctttaccgttcatctc 13584789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 41856467 - 41856612
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||  | ||||||||    
T  41856467 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccagaattaagcattgttgcaactac 41856566  T
Q  805 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  41856567 taattcggtaaacgttctatttttttctttccgctttaccgttcat 41856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 24773576 - 24773432
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  24773576 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 24773477  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||  ||||||||||||||    
T  24773476 taattcggtaaacgttctattttttcttttcgctttaccgttcat 24773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 42022860 - 42023005
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42022860 tctttgttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42022959  T
Q  805 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  42022960 taattcggtaaacgttctatttttttctttccgctttaccgttcat 42023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 17507950 - 17508093
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||  ||||||||||  | ||||||||    
T  17507950 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccgaaattaagcattgttgcaactac 17508049  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||| | |||||| |||| | |||||||||| ||||||||||||||    
T  17508050 taactcggtaaacgttcta-tttttctttccgctttaccgttcat 17508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 705 - 852
Target Start/End: Original strand, 19433322 - 19433469
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19433322 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19433421  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 852  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19433422 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19433469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 705 - 852
Target Start/End: Original strand, 19569472 - 19569619
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19569472 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19569571  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 852  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19569572 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19569619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 21646301 - 21646157
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21646301 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21646202  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21646201 taattcggtaaacgttctattttttctttccgctttaccgttcat 21646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 32013574 - 32013718
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  32013574 tctttgttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 32013673  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  32013674 taattcggtaaatgttctattttttctttccgctttaccgttcat 32013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 705 - 851
Target Start/End: Complemental strand, 17285064 - 17284919
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  17285064 tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc-accaatgaggcgctgcaccagaattaagcatgatagcacctac 17284966  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatct 851  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17284965 taattcggtaaaggttcgattttttctttccgctttaccgttcatct 17284919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 705 - 853
Target Start/End: Original strand, 10491015 - 10491163
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10491015 tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccataattaagcatgatagcaactac 10491114  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcatctca 853  Q
    ||||| |||||| ||||||||||||||||  |||||| |||||||||||    
T  10491115 taattcggtaaaagttcgattttttcttttcgctttatcgttcatctca 10491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 22700465 - 22700321
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  22700465 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 22700366  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  22700365 taattcggtaaacgttctattttttctttccgctttaccgttcat 22700321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 1439 - 1583
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  1439 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 1538  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  1539 taattcggtaaacgttctattttttctttccgctttaccgttcat 1583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 15960 - 15816
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15960 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15861  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15860 taattcggtaaacgttctattttttctttccgctttaccgttcat 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 14861 - 15005
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  14861 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 14960  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  14961 taattcggtaaacgttctattttttctttccgctttaccgttcat 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 29421 - 29565
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  29421 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 29520  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  29521 taattcggtaaacgttctattttttctttccgctttaccgttcat 29565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 33241051 - 33241195
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  33241051 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 33241150  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  33241151 taattcggtaaacgttctattttttctttccgctttaccgttcat 33241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 47996848 - 47996992
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  47996848 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 47996947  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  47996948 taattcggtaaacgttctattttttctttccgctttaccgttcat 47996992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 755
Target Start/End: Original strand, 17498785 - 17498835
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 755  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17498785 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 755
Target Start/End: Complemental strand, 17554429 - 17554379
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 755  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17554429 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 3479166 - 3479022
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  3479166 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 3479067  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  3479066 taattcggtaaacgttctattttttctttccgctttaccgttcat 3479022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 15765238 - 15765094
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15765238 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15765139  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15765138 taattcggtaaacgttctattttttctttccgctttaccgttcat 15765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 17361953 - 17362097
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17361953 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17362052  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17362053 taattcggtaaacgttctattttttctttccgctttaccgttcat 17362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 17366595 - 17366739
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17366595 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17366694  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17366695 taattcggtaaacgttctattttttctttccgctttaccgttcat 17366739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 20092869 - 20092725
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  20092869 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 20092770  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  20092769 taattcggtaaacgttctattttttctttccgctttaccgttcat 20092725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 42725667 - 42725523
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42725667 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42725568  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  42725567 taattcggtaaacgttctattttttctttccgctttaccgttcat 42725523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 44756819 - 44756675
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  44756819 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 44756720  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  44756719 taattcggtaaacgttctattttttctttccgctttaccgttcat 44756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 708 - 849
Target Start/End: Complemental strand, 40035975 - 40035834
Alignment:
Q  708 tagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaa 807  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||| |||||   |||||||||||||| ||||||||||    
T  40035975 tagttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgaggcgatgcactgaaattaagcatgataacaactactaa 40035876  T
Q  808 tttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    || ||||||||||| |||||||||||| ||| |||| |||||    
T  40035875 ttcggtaaaggttctattttttctttcagctctacctttcat 40035834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 849
Target Start/End: Original strand, 27568706 - 27568786
Alignment:
Q  772 cgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcga---ttttttctttcggctttaccgttcat 849  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||  |   |||||||| || ||||||||||||||    
T  27568706 cgctgcaacggaattaagcatgatagcaactaataattcggtaaaggttatatttttttttctctccgctttaccgttcat 27568786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 27714319 - 27714463
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  27714319 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 27714418  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  27714419 taattcggtaaacgttctattttttctttccgctttaccgttcat 27714463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 705 - 849
Target Start/End: Complemental strand, 37406635 - 37406491
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  37406635 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 37406536  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  37406535 taattcggtaaacgttctattttttctttctgctttaccgttcat 37406491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 705 - 849
Target Start/End: Original strand, 5727993 - 5728137
Alignment:
Q  705 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 804  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  5727993 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 5728092  T
Q  805 taatttggtaaaggttcgattttttctttcggctttaccgttcat 849  Q
    ||||| | ||||  ||| |||||||||||| ||||||||||||||    
T  5728093 taattcgataaacattctattttttctttccgctttaccgttcat 5728137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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