View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11793_low_30 (Length: 316)
Name: NF11793_low_30
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 25893068 - 25893373
Alignment:
| Q |
1 |
aaaagtttattttcataagatcataatgtcaatctggaccatccgatttcaaccaaaacggcttccaatgcagtgactgca--------ggattccttga |
92 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25893068 |
aaaagttcattttcataagatcataatgtcaatctggaccatccgatttcaaccaaaacggcttccaatgcagtgactgcatgactggaggattccttga |
25893167 |
T |
|
| Q |
93 |
ccttggggaattcaggctcctctctttctctcttctataataacgaatgaagaatctttggagaataaataacaaatatttatggcaagttggaatcaac |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25893168 |
tcttggggaattcaggctcctctctttctctcttctataataacgaatgaagaatctttggagaataaataacaaatattgatggcaagttggaatcaac |
25893267 |
T |
|
| Q |
193 |
ttacattgcataaggtgaaagtggtcttgactttggttcatggagatcctgtccatcctcctttggtgtatcttccacggagagttgggctggtccattg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25893268 |
ttacattgcataaggtgaaagtggtcttgactttggttcatggagatcctgtccatcctcctttggtgtatcttccacggagagttgggctggtccattg |
25893367 |
T |
|
| Q |
293 |
cttgat |
298 |
Q |
| |
|
|||||| |
|
|
| T |
25893368 |
cttgat |
25893373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 25894415 - 25894536
Alignment:
| Q |
177 |
gcaagttggaatcaacttacattgcataaggtgaaagtggtcttgactttggttcatggagatcctgtccatcctcctttggtgtatcttccacggagag |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || || |
|
|
| T |
25894415 |
gcaagttgaaatcaacttacattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttggggtatcttccactgaaag |
25894514 |
T |
|
| Q |
277 |
ttgggctggtccattgcttgat |
298 |
Q |
| |
|
||| ||||| ||||| |||||| |
|
|
| T |
25894515 |
ttgagctgggccattacttgat |
25894536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University