View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_31 (Length: 299)
Name: NF11793_low_31
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 20132996 - 20132739
Alignment:
| Q |
19 |
agtacatccacgttgattagggaagcaagaattattatggattatttatttaatttctatattggataatgatattgctatagaatccaacctttgataa |
118 |
Q |
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| T |
20132996 |
agtacatccacgtagattagggaagcaagaattattatggattatttatttaatttctatattggataatgatattgctatagaatccaacctttaataa |
20132897 |
T |
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| Q |
119 |
catagccctcatgttagattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcagaacttcaacgttgataagctcattaactagcatt |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20132896 |
catagccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcagaacttcaacgttgataagctcattaactagcatt |
20132797 |
T |
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| Q |
219 |
gcggtgtggtagcttgttttgttttattctcttatgtggtcttggaatcagtactaaa |
276 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
20132796 |
gcggtgtggtagcttgttgtgttttattctcttatgtggtcttggaatcagaactaaa |
20132739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 20140219 - 20140036
Alignment:
| Q |
21 |
tacatccacgttgattagggaagcaagaattattatggattatttatttaatttctatattggataatgatattgctatagaatccaacctttgataaca |
120 |
Q |
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| T |
20140219 |
tacatccacgttgattagggaaccaagaattattactgattatttattt-----ctatactgggcaatgatattgctatagaatctactctttaataaca |
20140125 |
T |
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| Q |
121 |
tagccctcatgttagattttg---tgtagggttgtattcatgggagcacaattgaaggttgttgcag--aacttcaacgttgataagct |
204 |
Q |
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| T |
20140124 |
taaccctcatgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgatcagct |
20140036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 20423441 - 20423547
Alignment:
| Q |
81 |
tggataatgatattgctatagaatccaacctttgataacatagccctcatgttagattttgtgtagggttgtattcatgggagcacaattgaaggttgtt |
180 |
Q |
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||||||||| ||||||||||||||| || |||| |||||| ||||||||| ||| | | |||||| ||||||||||| ||||| |||||| |||||| |
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| T |
20423441 |
tggataatggtattgctatagaatctaatctttaataacacagccctcattttacctgtgatgtaggtttgtattcatgtcagcacgattgaaagttgtt |
20423540 |
T |
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| Q |
181 |
gcagaac |
187 |
Q |
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||||||| |
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| T |
20423541 |
gcagaac |
20423547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 20373832 - 20373747
Alignment:
| Q |
99 |
tagaatccaacctttgataacatagccctcatgttagattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcag |
184 |
Q |
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| T |
20373832 |
tagaatctaatctttaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaaattgttgcag |
20373747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 20339654 - 20339757
Alignment:
| Q |
83 |
gataatgatattgctatagaatccaacctttgataacatagccctc--atgttagattttgtgtagggttgtattcatgggagcacaattgaaggttgtt |
180 |
Q |
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|||||||||||||||| ||||| | |||| |||||||||||||| |||||| ||| ||||||||||||||| | || ||||| |||||||||||| |
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| T |
20339654 |
gataatgatattgctacagaattgcatctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgtt |
20339753 |
T |
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| Q |
181 |
gcag |
184 |
Q |
| |
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|||| |
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| T |
20339754 |
gcag |
20339757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 13397993 - 13398028
Alignment:
| Q |
19 |
agtacatccacgttgattagggaagcaagaattatt |
54 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
13397993 |
agtacatccatgttgattagggaagcaagaattatt |
13398028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 20407833 - 20407865
Alignment:
| Q |
23 |
catccacgttgattagggaagcaagaattatta |
55 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
20407833 |
catccatgttgattagggaagcaagaattatta |
20407865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 20423386 - 20423422
Alignment:
| Q |
19 |
agtacatccacgttgattagggaagcaagaattatta |
55 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
20423386 |
agtacatccatgttgattggggaagcaagaattatta |
20423422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 20442457 - 20442489
Alignment:
| Q |
23 |
catccacgttgattagggaagcaagaattatta |
55 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
20442457 |
catccatgttgattagggaagcaagaattatta |
20442489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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