View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_42 (Length: 229)
Name: NF11793_low_42
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5242360 - 5242567
Alignment:
| Q |
1 |
gtgctgcccacgatacaaccaatgttcaaactacgtaaaaatattaagtattattttctgaataatc----tttatagaaattttaaaatttgtgttata |
96 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
5242360 |
gtgctgcccacgatacaaccaatgttcaaactaagtaaaaatattaagtattattttctgaataatcaatctatatagaaattttaaaatttgtgttata |
5242459 |
T |
|
| Q |
97 |
aataatcctaaataaattgaacagtggaccactctaatatctttggcaaaccnnnnnnnnnnnnnnnngaggaaaatggtacatctcgaatatattagat |
196 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5242460 |
aataatcctaaataaattgaacagtggaccactctaatatctttggcaaaccaaaaaataaataaaaagaggaaaatggtacatctcgaatatattagat |
5242559 |
T |
|
| Q |
197 |
acttttgc |
204 |
Q |
| |
|
|||||||| |
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| T |
5242560 |
acttttgc |
5242567 |
T |
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