View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_43 (Length: 225)
Name: NF11793_low_43
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 12951159 - 12950997
Alignment:
| Q |
17 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcattcttcaatcttttcttt |
116 |
Q |
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| T |
12951159 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcatgcttcaatcttttcttt |
12951060 |
T |
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| Q |
117 |
ggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggat |
179 |
Q |
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| T |
12951059 |
ggtgctttgagatcgccactcctaaaacacaacaacaccaacattggattttttaaattggat |
12950997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 12889608 - 12889558
Alignment:
| Q |
17 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaagg |
67 |
Q |
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| T |
12889608 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaataaagg |
12889558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 14401907 - 14402019
Alignment:
| Q |
96 |
tcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacgg |
195 |
Q |
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| T |
14401907 |
tcatgcttcaatcttttcttgggtgatttatgagcgccactcctttcacacaacaactccaatattggattccttatatcggatcatcaaataacaactg |
14402006 |
T |
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| Q |
196 |
taaatccgaccct |
208 |
Q |
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| T |
14402007 |
taaatccggccct |
14402019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 30937910 - 30937797
Alignment:
| Q |
95 |
ttcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacg |
194 |
Q |
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||||| ||||||||||||||| | | ||||| |||| |||||||| ||||| |||| |||| |||||||||| || ||||||||| |||| |||| |
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| T |
30937910 |
ttcatgcttcaatcttttcttggatactttgtgatcaccactcctttcacacatcaactccaacattggattctgtatgctggatctttttataccaact |
30937811 |
T |
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| Q |
195 |
gtaaatccgaccct |
208 |
Q |
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| T |
30937810 |
gtaaatccggccct |
30937797 |
T |
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