View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_44 (Length: 219)
Name: NF11793_low_44
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_44 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2423489 - 2423706
Alignment:
| Q |
1 |
attgctccaaaatcaacagagatagattttgtatggaaaaaataatgtacttattatgttatcaaatgtttaaattatatcaagtatattttcattttat |
100 |
Q |
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| T |
2423489 |
attgctccaaaatcaacagagatagattttgtatggaaaaaataatgtacttattatgttatcaaatgtttaaattatatcaagtatattttcattttat |
2423588 |
T |
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| Q |
101 |
tgattcttttttcgatacttctaagttagtaagacctttaaaaaatacaaaatttgcacgacagtacacaacaagtttaaatatgnnnnnnnnccctaac |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
2423589 |
tgattcttttttcgatacttcgaagttagtaagacctttaaaaaatacaaaatttgcacgacagtacacaacaggtttaaatatg-tttttttccctaac |
2423687 |
T |
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| Q |
201 |
aaatacaattaggatcttt |
219 |
Q |
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||||||||||||||||||| |
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| T |
2423688 |
aaatacaattaggatcttt |
2423706 |
T |
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