View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_45 (Length: 207)
Name: NF11793_low_45
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 26621613 - 26621814
Alignment:
| Q |
11 |
cataggcccatccaaaaagggttgggtagcccgcttcgaaagctctataaaccatggaatatttataaatgaatataagtcaattataatttttagggtg |
110 |
Q |
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| T |
26621613 |
cataggcccatccaaaaagggttgggtagcccgcttcgaaagctctataaaccatggaatatttataaatgaatataagtcaattataaattttagggtg |
26621712 |
T |
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| Q |
111 |
tttcataaatcat-----taccagatttttggaagaaattggtgataattcgtatctgcacagactgggtttttggattggaatttggaagttgaaggct |
205 |
Q |
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| T |
26621713 |
tttcataaatcatgcacagaccagatttttggaagaaattggtgataattcgtatctgcacatactgggtttttggaatggaatttggaagttgaaggct |
26621812 |
T |
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| Q |
206 |
cc |
207 |
Q |
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|| |
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| T |
26621813 |
cc |
26621814 |
T |
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Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 7175200 - 7175270
Alignment:
| Q |
135 |
tggaagaaattggtgataattcgtatctgcacagactgggtttttggattggaatttggaagttgaaggct |
205 |
Q |
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| T |
7175200 |
tggaagaaattggtgataattcgtatctacacagaccgggtttttggaatggaatttggaagttgaaggct |
7175270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 31272907 - 31272806
Alignment:
| Q |
22 |
ccaaaaagggttgggtagcccgcttcgaaagctctataaaccatggaatatttataaatgaatataagtcaattataatttttagggtgtttcataaatc |
121 |
Q |
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| T |
31272907 |
ccaataagggttgagtagcccgctttgcaaactccgtaaaccatgaaatatttataaatgaatatatgttgattataaattttagggtgtttcagaaatc |
31272808 |
T |
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| Q |
122 |
at |
123 |
Q |
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|| |
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| T |
31272807 |
at |
31272806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 31266111 - 31266043
Alignment:
| Q |
36 |
gtagcccgcttcgaaagctctataaaccatggaatatttataaatgaatataagtcaattataattttt |
104 |
Q |
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|||| |||||| ||||||||| || | |||| ||||||||||||| |||| |||| |||||||||||| |
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| T |
31266111 |
gtagtccgctttgaaagctctgtagatcatgaaatatttataaatcaatacaagttgattataattttt |
31266043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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