View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_5 (Length: 636)
Name: NF11793_low_5
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 52446101 - 52445741
Alignment:
| Q |
3 |
tacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactataca |
102 |
Q |
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| T |
52446101 |
tacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactataca |
52446002 |
T |
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| Q |
103 |
ttatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcac |
202 |
Q |
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| T |
52446001 |
ttatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatcatacgtgtcag |
52445910 |
T |
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| Q |
203 |
ggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgta |
302 |
Q |
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| T |
52445909 |
ggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactcaatagtttgta |
52445810 |
T |
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| Q |
303 |
agaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
371 |
Q |
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| T |
52445809 |
agaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 369 - 616
Target Start/End: Complemental strand, 52445451 - 52445202
Alignment:
| Q |
369 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
466 |
Q |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
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| Q |
467 |
atcatgtgtctgaaaatatcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacaaaggagtggctgagcatgaatatcatatggatgt |
566 |
Q |
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| T |
52445351 |
attatgtgtccgaagatctcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacgaaggagtggctgagcatggatatcatatggatgt |
52445252 |
T |
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| Q |
567 |
catcaagaatgacattgtgtacgagcatgacatggctgacaagtccgtgg |
616 |
Q |
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| T |
52445251 |
catcaagaatgacattatgtacgagcatgacatggctgacaagtacgtgg |
52445202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 52447031 - 52446722
Alignment:
| Q |
12 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
111 |
Q |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
|
| Q |
112 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
201 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
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| Q |
202 |
cggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
301 |
Q |
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| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
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| Q |
302 |
aagaagaaattaaacatat |
320 |
Q |
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| T |
52446740 |
atgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
237 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
336 |
Q |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
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| Q |
337 |
gataaggtgtgtataaatatgtctttaatt |
366 |
Q |
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| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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