View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_6 (Length: 623)
Name: NF11793_low_6
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 371 - 607
Target Start/End: Complemental strand, 52154599 - 52154363
Alignment:
| Q |
371 |
atacgtaggatctactttgtactatgcctgcccaaatagatgtggtgtagaggtcacatgtgatgaaaaaactatttgttctcggtgcaacatagctatg |
470 |
Q |
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| T |
52154599 |
atacataggatctactttgtactatgcctgcccaaatagatgtggtgtagaggtcacatgtgatgaaaaaactatttgttctcggtgcaacatagctatg |
52154500 |
T |
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| Q |
471 |
aaccgccattcacattttgagcttaagacaaaggatgttgaagaaaacatcttgattaagaatgggttcgtgaaagatgatgtaactttcttggtgatgg |
570 |
Q |
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| T |
52154499 |
aaccgccgttcacattttgagcttaagacaaaggatgttgaagaaaacatcttgattaagaatgggttcgtgaaagatgatgtaactttcttggtgatgg |
52154400 |
T |
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| Q |
571 |
atgatttagttattcaacccttgagttcagctatatc |
607 |
Q |
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| T |
52154399 |
atgatttagttattcaacccttgagttcagctatatc |
52154363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 52154963 - 52154763
Alignment:
| Q |
7 |
gtagcataggaaacatttatcaaagtgttgaagatcttgatgagaaatacatgcatcaagaacaatccaagaatcttctcttaaatccaaccgcttccat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52154963 |
gtagcataggaaacatttatcaaagtgttgaagatcttgatgagaaattcatgcatcaagaacaatccaagaatcttctcttaaatccaaccgcttccat |
52154864 |
T |
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| Q |
107 |
ctcttcaaatgaattctgtaatcttttgcccacaatcgatggcaatgacgaatcttccatatcatctttatctgaatttcttcttgtggccgagttggac |
206 |
Q |
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| T |
52154863 |
ctcttcaaatgaattctgtaatcttttgcccacaatcgatggcaatgatgaatcttccatatcatctttatctgaatttcttcttgtggccgagttggac |
52154764 |
T |
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| Q |
207 |
a |
207 |
Q |
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| T |
52154763 |
a |
52154763 |
T |
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