View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11793_low_7 (Length: 604)
Name: NF11793_low_7
Description: NF11793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11793_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Complemental strand, 47288217 - 47287652
Alignment:
| Q |
19 |
acctccaaactcatttcctaaacaaacatcatcccatttataaatgacgactttaccaacnnnnnnnn-cttttaataatactctcagagacaacgggta |
117 |
Q |
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| T |
47288217 |
acctccaaactcatttcctaaacaaacatcatcccatttataaatgacgactttaccaacaaaaaaaaacttttaataatactctcaga--caacgggta |
47288120 |
T |
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| Q |
118 |
tcaaaattttaagcgttgtgaatctcctcctatattgataagctcaaatacataaaaagcatgttatcggttttatatacatcatatataaatatattgt |
217 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47288119 |
tcaaaattttaaacgttgtgaatctccttctatattgataagctcaaatacataaaaagcatgttatcggttttatatacatcatatataaatatattgt |
47288020 |
T |
|
| Q |
218 |
tagacaacaaaacagacatataacatttatcatgttttaaaagaataattttcatgtaaaattctgtatatatgtattcaaccaaagttacacttaagnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47288019 |
tagacaacaaaacagacatataacatttatcatgttttaaaagaataattttcatgtaaaattctgtatatatgtattcaatcaaagttacacttaagtt |
47287920 |
T |
|
| Q |
318 |
nnnnnaagagataattttaattgaatatgttggactcagaattaatctttataagtgtctactgaaatatatgattcactgcaacaaaatattacactgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47287919 |
tttttaagagataattttaattgaatatgttggactcagaattaatctttataagtgtctactgaaatatatgattcactgcaacaaaatattacactgt |
47287820 |
T |
|
| Q |
418 |
agacgatacatttaatattttgaacggtatgattttaacgaatgcatgtgttacactgtcaatataaagnnnnnnnnnttatattttaaaatttggcaag |
517 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47287819 |
cgatgatacatttaatattttgaacggtatgattttaacgaatgcatgtgttacactgtcaatataaag-aaaaaaaattatattttaaaatttggcaag |
47287721 |
T |
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| Q |
518 |
gtgataatccgatggggatactaatgcttaccctgtcacaagtcacattattttctttgtacctttggt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47287720 |
gtgataatccgatggggatactaatgcttaccctgtcacaagtcacattattttctttgtacctttggt |
47287652 |
T |
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