View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11794_high_10 (Length: 489)
Name: NF11794_high_10
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 329588 - 329127
Alignment:
| Q |
10 |
aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttaatttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329588 |
aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttagtttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc |
329489 |
T |
|
| Q |
110 |
tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtttaattattatgaaatta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329488 |
tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtttaattattatgaaatta |
329389 |
T |
|
| Q |
210 |
aacaaagaaaaatggaataaaattttgagtgcttatagcaaatactatgatagtatgtgcacacacaccttcaatggtggatattttgagaaaggagcat |
309 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329388 |
aaca--gaaaaatgggataaaattttgagtgcttatagcaaatactatgatagtatgtgcacacacaccttcaatggtggatattttgagaaaggagcat |
329291 |
T |
|
| Q |
310 |
ggccatgggcaagctccaatgcagttatgccaaatgaccaaatgtcagctctgcaagattaattttgaatgtaattattgccagcatgtcaataagccag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
329290 |
ggccatgggcaagctccaatgcagttatgccaaatgaccaaatgtcagctctgcaagattaattttgaatgtcattattgccagcatgtcaataagccag |
329191 |
T |
|
| Q |
410 |
ggtaattaaacaaggttttggaatgtgttacgacaaaatcattgatattatgggacctccgttt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329190 |
ggtaattaaacaaggttttggaatgtgttacgacaaaatcattgatattatgggacctccgttt |
329127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 1202352 - 1202405
Alignment:
| Q |
125 |
tcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagca |
178 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
1202352 |
tcttgtctctttcataatcaagacctggaggggcattctgcaaagtcataagca |
1202405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University